Publications

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Publications List - 2015 (Till June)| Download PDF

  1. Joshi PK, Esko T, Mattsson H, Eklund N, Gandin I, Nutile T, Jackson AU, Schurmann C, Smith AV, Zhang W, Okada Y, Stancáková A, Faul JD, Zhao W, Bartz TM, Concas MP, Franceschini N, Enroth S, Vitart V, Trompet S, Guo X, Chasman DI, O'Connel JR, Corre T, Nongmaithem SS, Chen Y, Mangino M, Ruggiero D, Traglia M, Farmaki AE, Kacprowski T, Bjonnes A, van der Spek A, Wu Y, Giri AK, Yanek LR, Wang L, Hofer E, Rietveld CA, McLeod O, Cornelis MC, Pattaro C, Verweij N, Baumbach C, Abdellaoui A, Warren HR, Vuckovic D, Mei H, Bouchard C, Perry JR, Cappellani S, Mirza SS, Benton MC, Broeckel U, Medland SE, Lind PA, Malerba G, Drong A, Yengo L, Bielak LF, Zhi D, van der Most PJ, Shriner D, Mägi R, Hemani G, Karaderi T, Wang Z, Liu T, Demuth I, Zhao JH, Meng W, Lataniotis L, van der Laan SW, Bradfield JP, Wood AR, Bonnefond A, Ahluwalia TS, Hall LM, Salvi E, Yazar S, Carstensen L, de Haan HG, Abney M, Afzal U, Allison MA, Amin N, Asselbergs FW, Bakker SJ, Barr RG, Baumeister SE, Benjamin DJ, Bergmann S, Boerwinkle E, Bottinger EP, Campbell A, Chakravarti A, Chan Y, Chanock SJ, Chen C, Chen YD, Collins FS, Connell J, Correa A, Cupples LA, Smith GD, Davies G, Dörr M, Ehret G, Ellis SB, Feenstra B, Feitosa MF, Ford I, Fox CS, Frayling TM, Friedrich N, Geller F, Scotland G, Gillham-Nasenya I, Gottesman O, Graff M, Grodstein F, Gu C, Haley C, Hammond CJ, Harris SE, Harris TB, Hastie ND, Heard-Costa NL, Heikkilä K, Hocking LJ, Homuth G, Hottenga JJ, Huang J, Huffman JE, Hysi PG, Ikram MA, Ingelsson E, Joensuu A, Johansson Å, Jousilahti P, Jukema JW, Kähönen M, Kamatani Y, Kanoni S, Kerr SM, Khan NM, Koellinger P, Koistinen HA, Kooner MK, Kubo M, Kuusisto J, Lahti J, Launer LJ, Lea RA, Lehne B, Lehtimäki T, Liewald DC, Lind L, Loh M, Lokki ML, London SJ, Loomis SJ, Loukola A, Lu Y, Lumley T, Lundqvist A, Männistö S, Marques-Vidal P, Masciullo C, Matchan A, Mathias RA, Matsuda K, Meigs JB, Meisinger C, Meitinger T, Menni C, Mentch FD, Mihailov E, Milani L, Montasser ME, Montgomery GW, Morrison A, Myers RH, Nadukuru R, Navarro P, Nelis M, Nieminen MS, Nolte IM, O'Connor GT, Ogunniyi A, Padmanabhan S, Palmas WR, Pankow JS, Patarcic I, Pavani F, Peyser PA, Pietilainen K, Poulter N, Prokopenko I, Ralhan S, Redmond P, Rich SS, Rissanen H, Robino A, Rose LM, Rose R, Sala C, Salako B, Salomaa V, Sarin AP, Saxena R, Schmidt H, Scott LJ, Scott WR, Sennblad B, Seshadri S, Sever P, Shrestha S, Smith BH, Smith JA, Soranzo N, Sotoodehnia N, Southam L, Stanton AV, Stathopoulou MG, Strauch K, Strawbridge RJ, Suderman MJ, Tandon N, Tang ST, Taylor KD, Tayo BO, Töglhofer AM, Tomaszewski M, Tšernikova N, Tuomilehto J, Uitterlinden AG, Vaidya D, van Hylckama Vlieg A, van Setten J, Vasankari T, Vedantam S, Vlachopoulou E, Vozzi D, Vuoksimaa E, Waldenberger M, Ware EB, Wentworth-Shields W, Whitfield JB, Wild S, Willemsen G, Yajnik CS, Yao J, Zaza G, Zhu X; BioBank Japan Project, Salem RM, Melbye M, Bisgaard H, Samani NJ, Cusi D, Mackey DA, Cooper RS, Froguel P, Pasterkamp G, Grant SF, Hakonarson H, Ferrucci L, Scott RA, Morris AD, Palmer CN, Dedoussis G, Deloukas P, Bertram L, Lindenberger U, Berndt SI, Lindgren CM, Timpson NJ, Tönjes A, Munroe PB, Sørensen TI, Rotimi CN, Arnett DK, Oldehinkel AJ, Kardia SL, Balkau B, Gambaro G, Morris AP, Eriksson JG, Wright MJ, Martin NG, Hunt SC, Starr JM, Deary IJ, Griffiths LR, Tiemeier H, Pirastu N, Kaprio J, Wareham NJ, Pérusse L, Wilson JG, Girotto G, Caulfield MJ, Raitakari O, Boomsma DI, Gieger C, van der Harst P, Hicks AA, Kraft P, Sinisalo J, Knekt P, Johannesson M, Magnusson PK, Hamsten A, Schmidt R, Borecki IB, Vartiainen E, Becker DM, Bharadwaj D, Mohlke KL, Boehnke M, van Duijn CM, Sanghera DK, Teumer A, Zeggini E, Metspalu A, Gasparini P, Ulivi S, Ober C, Toniolo D, Rudan I, Porteous DJ, Ciullo M, Spector TD, Hayward C, Dupuis J, Loos RJ, Wright AF, Chandak GR, Vollenweider P, Shuldiner AR, Ridker PM, Rotter JI, Sattar N, Gyllensten U, North KE, Pirastu M, Psaty BM, Weir DR, Laakso M, Gudnason V, Takahashi A, Chambers JC, Kooner JS, Strachan DP, Campbell H, Hirschhorn JN, Perola M, Polašek O, Wilson JF.Directional dominance on stature and cognition in diverse human populations.NATURE 2015 Jul 23;523(7561):459-62.
  2. Kumar R, Kohli S, Ali Z, Duhan K, Ram R, Gupta M, Tyagi S, Mohammad G, Pasha MQ.CYBA (p22phox) variants associate with blood pressure and oxidative stress markers in hypertension: a replication study in populations of diverse altitudes. HYPERTENS RES 2015 Jul;38(7):498-506.
  3. Mitra A, Basak T, Ahmad S, Datta K, Datta R, Sengupta S, Sarkar S.Comparative Proteome Profiling during Cardiac Hypertrophy and Myocardial Infarction Reveals Altered Glucose Oxidation by Differential Activation of Pyruvate Dehydrogenase E1 Component Subunit ß. J MOL BIOL 2015 Jun 5;427(11):2104-20.
  4. Pai P, Arathil P, Kotambail A, Nair R, Gupta M, Moily NS, Kukreti R, Jain S, Rai PS, Gopinath PM, Sharma PS, Satyamoorthy K.Association of GRIN1, ABCB1, and DRD4 genes and response to antipsychotic drug treatment in schizophrenia. PSYCHIAT GENET 2015 Jun;25(3):135-6.
  5. Bhushan A, Mukherjee T, Joshi J, Shankar P, Kalia VC.Insights into the Origin of Clostridium botulinum Strains: Evolution of Distinct Restriction Endonuclease Sites in rrs (16S rRNA gene).INDIAN J MICROBIOL 2015 Jun;55(2):140-50.
  6. M Singh, S Bansal, S Kundu, P Bhargava, A Singh, Motiani RK, Shyam R, Sreekanth V, Sengupta S, Bajaj A.Synthesis, structure–activity relationship, and mechanistic investigation of lithocholic acid amphiphiles for colon cancer therapy. MED CHEM COMMUN. 2015 Jun; 192-201.
  7. Gupta A, Sharma Y, Dash KN, Verma S, Natarajan VT, Singh A.Ultrastructural Investigations in an Autosomal Recessively Inherited Case of Dyschromatosis Universalis Hereditaria (Short Communication). ACTA DERM-VENEREOL 2015 Jun 24;95(6):738-740.
  8. Mishra A, Kohli S, Dua S, Thinlas T, Mohammad G, Pasha MAQ.Genetic differences and aberrant methylation in the apelin system predict the risk of high-altitude pulmonary edema.P NATL ACAD SCI USA 2015 May 12;112(19):6134-9.
  9. Maiti GP, Ghosh A, Mondal P, Baral A, Datta S, Samadder S, Nayak SP, Chakrabarti J, Biswas J, Sikdar N, Chowdhury S, Roy B, Roychowdhury S, Panda CK.SNP rs1049430 in the 3'-UTR of SH3GL2 regulates its expression: Clinical and prognostic implications in head and neck squamous cell carcinoma.BBA-MOL BASIS DIS 2015 May;1852(5):1059-67.
  10. Jajodia A, Singh KD, Singhal A, Vig S, Datta M, Singh Y, Karthikeyan M, Kukreti R.Methylation of a HTR3A promoter variant alters the binding of transcription factor CTCF.RSC ADV 2015 May; 5, 45710-45717
  11. Singh R, Singh R, Kim IW, Sigdel S, Kalia VC, Kang YC, Lee JK.An efficient ribitol-specific dehydrogenase from Enterobacter aerogenes.ENZYME MICROB TECH 2015 May;72:56-64.
  12. Rayees S, Mabalirajan U, Bhat WW, Rasool S, Rather RA, Panda L, Satti NK, Lattoo SK, Ghosh B, Singh G.Therapeutic effects of R8, a semi-synthetic analogue of Vasicine, on murine model of allergic airway inflammation via STAT6 inhibition.INT IMMUNOPHARMACOL 2015 May;26(1):246-256.
  13. Sharma A.Transgenerational epigenetic inheritance requires a much deeper analysis. TRENDS MOL MED 2015 May;21(5):269-70.
  14. Saw S, Arora N.Protease Inhibitor Reduces Airway Response and Underlying Inflammation in Cockroach Allergen-Induced Murine Model. INFLAMMATION 2015 Apr;38(2):672-82.
  15. Ahirwar R, Nahar P.Screening and identification of a DNA aptamer to concanavalin a and its application in food analysis.J AGR FOOD CHEM 2015 Apr 29;63(16):4104-11.
  16. Bose T, Banerjee A, Nahar S, Maiti S, Kumar VA.ß,gamma-Bis-substituted PNA with configurational and conformational switch: preferred binding to cDNA/RNA and cell-uptake studies.CHEM COMMUN 2015 Apr 21;51(36):7693-6.
  17. Periwal V, Patowary A, Vellarikkal SK, Gupta A, Singh M, Mittal A, Jeyapaul S, Chauhan RK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K, Chauhan DS, Sivasubbu S, Scaria V.Comparative Whole-Genome Analysis of Clinical Isolates Reveals Characteristic Architecture of Mycobacterium tuberculosis Pangenome.PLOS ONE 2015 Apr 8;10(4):e0122979.
  18. Agarwala P, Kumar S, Pandey S, Maiti S.Human telomeric RNA g-quadruplex response to point mutation in the g-quartets.J PHYS CHEM B 2015 Apr 2;119(13):4617-27.
  19. Kumar P, Sharma R, Ray S, Mehariya S, Patel SK, Lee JK, Kalia VC.Dark fermentative bioconversion of glycerol to hydrogen by Bacillus thuringiensis.BIORESOURCE TECHNOL 2015 Apr;182:383-8.
  20. Kumar P, Ray S, Patel SK, Lee JK, Kalia VC.Bioconversion of crude glycerol to polyhydroxyalkanoate by Bacillus thuringiensis under non-limiting nitrogen conditions.INT J BIOL MACROMOL 2015 Apr 1;78:9-16.
  21. Vellarikkal SK, Dhiman H, Joshi K, Hasija Y, Sivasubbu S, Scaria V.mit-o-matic: A Comprehensive Computational Pipeline for Clinical Evaluation of Mitochondrial Variations from Next-Generation Sequencing Datasets.HUM MUTAT 2015 Apr;36(4):419-24.
  22. Latka C, Dey SS, Mahajan S, Prabu R, Jangir PK, Gupta C, Das S, Ramachandran VG, Bhattacharya SN, Pandey R, Sharma R, Ramachandran S, Taneja B.Genome sequence of a clinical isolate of dermatophyte, Trichophyton rubrum from India. FEMS MICROBIOL LETT 2015 Apr;362(8).
  23. Bose D, Nahar S, Rai MK, Ray A, Chakraborty K, Maiti S.Selective inhibition of miR-21 by phage display screened peptide. NUCLEIC ACIDS RES 2015 Apr 30;43(8):4342-52.
  24. Kumar S, Malhotra S, Prasad AK, Van der Eycken EV, Bracke ME, Stetler-Stevenson WG, Parmar VS, Ghosh B.Anti-inflammatory and antioxidant properties of piper species: a perspective from screening to molecular mechanisms.CURR TOP MED CHEM 2015 Apr ;15(9):886-93.
  25. Pahuja R, Seth K, Shukla A, Shukla RK, Bhatnagar P, Chauhan LK, Saxena PN, Arun J, Chaudhari BP, Patel DK, Singh SP, Shukla R, Khanna VK, Kumar P, Chaturvedi RK, Gupta KC.Trans-Blood Brain Barrier Delivery of Dopamine-Loaded Nanoparticles Reverses Functional Deficits in Parkinsonian Rats.ACS NANO 2015 Apr 22.
  26. Bhatnagar P, Pant AB, Shukla Y, Chaudhari B, Kumar P, Gupta KC.Bromelain nanoparticles protect against 7,12-dimethylbenz[a]anthracene induced skin carcinogenesis in mouse model. EUR J PHARM BIOPHARM 2015 Apr;91:35-46.
  27. Naik RJ, Sharma R, Nisakar D, Purohit G, Ganguli M.Exogenous chondroitin sulfate glycosaminoglycan associate with arginine-rich peptide-DNA complexes to alter their intracellular processing and gene delivery efficiency.BBA-BIOMEMBRANES 2015 Apr;1848(4):1053-64.
  28. Kale Sagar L, Arora N.Per a 10 activates human derived epithelial cell line in a protease dependent manner via PAR2. IMMUNOBIOLOGY 2015 Apr;220(4):525-32.
  29. Meena LS.An overview to understand the role of PE_PGRS family proteins in Mycobacterium tuberculosis H37 Rv and their potential as new drug targets. (Review) BIOTECHNOL APPL BIOC 2015 Apr; 62(2):145-153.
  30. Singh LK, Dhasmana N, Sajid A, Kumar P, Bhaduri A, Bharadwaj M, Gandotra S, Kalia VC, Das TK, Goel AK, Pomerantsev AP, Misra R, Gerth U, Leppla SH, Singh Y.clpC operon regulates cell architecture and sporulation in Bacillus anthracis. ENVIRON MICROBIOL 2015 Mar;17(3):855-65.
  31. Ghosh S, Sati S, Sengupta S, Scaria V.Distinct patterns of epigenetic marks and transcription factor binding sites across promoters of sense-intronic long noncoding RNAs.J GENET 2015 Mar;94(1):17-25.
  32. Jajodia A, Kaur H, Kumari K, Gupta M, Baghel R, Srivastava A, Sood M, Chadda RK, Jain S, Kukreti R.Evidence for schizophrenia susceptibility alleles in the Indian population: An association of neurodevelopmental genes in case-control and familial samples.SCHIZOPHR RES 2015 Mar;162(1-3):112-7.
  33. Vashisht R, Brahmachari SK.Metformin as a potential combination therapy with existing front-line antibiotics for Tuberculosis.J TRANSL MED 2015 Mar 7;13(1):83.
  34. Dhiman SS, Haw JR, Kalyani D, Kalia VC, Kang YC, Lee JK.Simultaneous pretreatment and saccharification: green technology for enhanced sugar yields from biomass using a fungal consortium.BIORESOURCE TECHNOL 2015 Mar;179:50-7.
  35. Kalyani D, Tiwari MK, Li J, Kim SC, Kalia VC, Kang YC, Lee JK.A Highly Efficient Recombinant Laccase from the Yeast Yarrowia lipolytica and Its Application in the Hydrolysis of Biomass.PLOS ONE 2015 Mar 17;10(3):e0120156.
  36. Dandage R, Bandyopadhyay A, Jayaraj GG, Saxena K, Dalal V, Das A, Chakraborty K.Classification of chemical chaperones based on their effect on protein folding landscapes.ACS CHEM BIOL 2015 Mar 20;10(3):813-20.
  37. Deka SR, Sharma AK, Kumar P.Cationic polymers and their self-assembly for antibacterial applications.CURR TOP MED CHEM 2015 Mar 30.
  38. Bansal R, Tayal S, Gupta KC, Kumar P.Bioreducible polyethylenimine nanoparticles for the efficient delivery of nucleic acids.ORG BIOMOL CHEM 2015 Mar 14;13(10):3128-35.
  39. Dhawan G, Chandra R, Gupta KC, Kumar P.Facile and rapid deprotection conditions for the cleavage of synthetic oligonucleotides from 1,4-anhydroerythritol-based universal polymer support.NUCLEOS NUCLEOT NUCL 2015;34(3):149-62.
  40. Sharma P, Gaur SN, Goel N, Arora N.Engineered hypoallergenic variants of osmotin demonstrate hypoallergenicity with in vitro and in vivo methods.MOL IMMUNOL 2015 Mar;64(1):46-54.
  41. Kumar A, Pathak P, Purkait S, Faruq M, Jha P, Mallick S, Suri V, Sharma MC, Suri A, Sarkar C.Oncogenic KIAA1549-BRAF fusion with activation of the MAPK/ERK pathway in pediatric oligodendrogliomas.CANCER GENET-NY 2015 Mar;208(3):91-5.
  42. Gautam P, Chaurasia A, Bhattacharya A, Grover R; Indian Genome Variation Consortium, Mukerji M, Natarajan VT.Population diversity and adaptive evolution in keratinization genes: impact of environment in shaping skin phenotypes.MOL BIOL EVOL 2015 Mar;32(3):555-73.
  43. Mudgal A, Pasha S.Role of opioid receptor heterodimerization in pain modulation and tolerance development.WORLD J PHARMACOL 2015 Mar 9; 4(1): 144-159
  44. Kumar P, Mehariya S, Ray S, Mishra A, Kalia VC.Biodiesel industry waste:a potential source of bioenergy and biopolymers (Review Article).INDIAN J MICROBIOL 2015 Mar; 55 (1): 1-7.
  45. Monu, Meena P, Meena A, Meena LS.Imperative role of fibronectin binding proteins in cell adhesion and invasion: An overview.ADV RES J BIOCHEM BIOTECH. 2015 Mar; 2(1): 31-40.
  46. Kumar R, Kohli S, Mishra A, Garg R, Alam P, Stobdan T, Nejatizadeh A, Gupta M, Tyagi S, Pasha MA.Interactions Between the Genes of Vasodilatation Pathways Influence Blood Pressure and Nitric Oxide Level in Hypertension. AM J HYPERTENS 2015 Feb;28(2):239-47.
  47. Pathak P, Jha P, Purkait S, Sharma V, Suri V, Sharma MC, Faruq M, Suri A, Sarkar C.Altered global histone-trimethylation code and H3F3A-ATRX mutation in pediatric GBM. J NEUROONCOL 2015 Feb;121(3):489-97.
  48. Das RH, Ahirwar R, Kumar S, Nahar P.Microwave-mediated enzymatic modifications of DNA.ANAL BIOCHEM 2015 Feb; 471; 26-28.
  49. Netravathi M, Kumari R, Kapoor S, Dakle P, Dwivedi MK, Roy SD, Pandey P, Saini J, Ramakrishna A, Navalli D, Satishchandra P, Pal PK, KumarA, Faruq M.Whole exome sequencing in an Indian family links Coats plus syndrome and dextrocardia with a homozygous novel CTC1 and a rare HES7 variation.BMC MED GENET 2015 Feb 10;16(1):5
  50. Nambi KS, Majeed SA, Taju G, Sivasubbu S, Raj NS, Madan N, Hameed AS.Development and use of retinal pigmented epithelial cell line from zebrafish (Danio rerio) for evaluating the toxicity of ultraviolet-B.ZEBRAFISH 2015 Feb;12(1):21-32.
  51. Dhamija N, Choudhary D, Ladha JS, Pillai B, Mitra D.Tat predominantly associates with host promoter elements in HIV-1-infected T-cells - regulatory basis of transcriptional repression of c-Rel.FEBS J 2015 Feb;282(3):595-610.
  52. Nagarajan S, Upadhyay S, Chawla Y, Khan S, Naz S, Subramanian J, Gandotra S, Nandicoori VK.Protein kinase A (PknA) of Mycobacterium tuberculosis is independently activated and is critical for growth in vitro and survival of the pathogen in the host. J BIOL CHEM 2015 Apr 10;290(15):9626-45.
  53. Kasera R, Singh AB, Lavasa S, Prasad KN, Arora N.Enzymatic hydrolysis: A method in alleviating legume allergenicity. FOOD CHEM TOXICOL 2015 Feb;76:54-60.
  54. Mishra A, Jain A, Arora N.Mapping B-cell epitopes of major and minor peanut allergens and identifying residues contributing to IgE binding.J SCI FOOD AGR 2015 Feb 4.
  55. Faruq M, Srivastava AK, Singh S, Gupta R, Dada T, Garg A, Behari M, Mukerji M.Spinocerebellar ataxia 7 (SCA7) in Indian population: predilection of ATXN7-CAG expansion mutation in an ethnic population.INDIAN J MED RES 2015 Feb;141(2):187-98.
  56. Kar A, Chowdhury S.Inhibition of telomerase activity by NME2: impact on metastasis suppression?Naunyn Schmiedebergs Arch Pharmacol. 2015 Feb;388(2):235-41.
  57. Parween S, Nahar P.Femtogram detection of horseradish peroxidase by a common desktop scanner. J BIOSCI BIOENG 2015 Jan;119(1):113-6.
  58. Sharma P, Gaur SN, Arora N.Immunotherapy with B cell epitopes ameliorates inflammatory responses in Balb/c mice.CLIN EXP IMMUNOL 2015 Jan;179(1):128-36.
  59. Jayaraj GG, Nahar S, Maiti S.Nonconventional chemical inhibitors of microRNA: therapeutic scope. CHEM COMMUN 2015 Jan 18;51(5):820-31.
  60. Periwal V, Scaria V.Insights into structural variations and genome rearrangements in prokaryotic genomes. BIOINFORMATICS 2015 Jan 1;31(1):1-9.
  61. Arya S, Lal P, Singh P, Kumar A.Recent advances in diagnosis of HIV and future prospects.INDIAN J BIOTECHNOL 2015 Jan; 14: 9-18.
  62. Patel SK, Kumar P, Singh M, Lee JK, Kalia VC.Integrative approach to produce hydrogen and polyhydroxybutyrate from biowaste using defined bacterial cultures.BIORESOURCE TECHNOL 2015 Jan;176:136-41.
  63. Dey D, Maiti C, Maiti S, Dhara D.Interaction between calf thymus DNA and cationic bottle-brush copolymers: equilibrium and stopped-flow kinetic studies.PHYS CHEM CHEM PHYS 2015 Jan 28;17(4):2366-77.
  64. Kozusko K, Tsang VH, Bottomley W, Cho YH, Gandotra S, Mimmack M, Lim K, Isaac I, Patel S, Saudek V, O'Rahilly S, Srinivasan S, Greenfield JR, Barroso I, Campbell LV, Savage DB.Clinical and molecular characterization of a novel PLIN1 frameshift mutation identified in patients with familial partial lipodystrophy.DIABETES 2015 Jan;64(1):299-310.
  65. Bhowmik M, Khanam R, Saini N, Vohora D.Activation of AKT/GSK3ß pathway by TDZD-8 attenuates kainic acid induced neurodegeneration but not seizures in mice.NEUROTOXICOLOGY 2015 Jan;46:44-52.
  66. Dubey R, Saini N.STAT6 silencing up-regulates cholesterol synthesis via miR-197/FOXJ2 axis and induces ER stress-mediated apoptosis in lung cancer cells.BBA-GENE REGUL MECH 2015 Jan;1849(1):32-43.
  67. Thakur RK, Yadav VK, Kumar A, Basundra R, Kar A, Halder R, Singh A, Kumar P, Baral A, Kumar MM, Pal K, Banerjee R, Chowdhury S.Functional genomics of lung cancer progression reveals mechanism of metastasis suppressor function.MOL CYTOGENET 2014 Jan 21;7(Suppl 1 Proceedings of the International Conference on Human):I9.
  68. Parween S, Nahar P.Reply to comments on Image-based ELISA on an activated polypropylene microtest plate — A spectrophotometer-free low cost assay technique. BIOSENS BIOELECTRON 2015 Jan 15;63:605-8.

Pulications List - 2014| Download PDF

  1. Kumar D, Mondal AK, Yadav AK, Dash D.Discovery of rare protein-coding genes in model methylotroph Methylobacterium extorquens AM1. PROTEOMICS 2014 Dec;14(23-24):2790-4.
  2. Pathak R, Narang P, Chandra M, Kumar R, Sharma PK, Gautam HK.Homology modeling and comparative profiling of superoxide dismutase among extremophiles: exiguobacterium as a model organism.INDIAN J MICROBIOL 2014 Dec;54(4):450-8.
  3. Kumari P, Meena LS.Factors Affecting Susceptibility to Mycobacterium tuberculosis: a Close View of Immunological Defence Mechanism. APPL BIOCHEM BIOTECH 2014 Dec;174(8):2663-73.
  4. Bhatnagar P, Patnaik S, Srivastava AK, Mudiam MK, Shukla Y, Panda AK, Pant AB, Kumar P, Gupta KC.Anti-cancer activity of bromelain nanoparticles by oral administration.J BIOMED NANOTECHNOL 2014 Dec;10(12):3558-75.
  5. Faruq M, Verma M, Kaur H, Srivastava AK, Kukreti R, Mukhopadhyay A, Ganguly NK, Taneja V,Lack of association of transthyretin variations with spinocerebellar ataxia in north Indian population.NEUROL ASIA 2014 Dec; 19(4) : 367 – 374
  6. Agarwala P, Pandey S, Maiti S.Role of G-quadruplex located at 5' end of mRNAs.BBA-GEN SUBJECTS 2014 Dec;1840(12):3503-10.
  7. Kaur H, Jajodia A, Grover S, Baghel R, Jain S, Kukreti R.Synergistic association of PI4KA and GRM3 genetic polymorphisms with poor antipsychotic response in south Indian schizophrenia patients with low severity of illness.AM J MED GENET B 2014 Dec;165(8):635-46.
  8. Srivastav R, Kumar D, Grover A, Singh A, Manjasetty BA, Sharma R, Taneja B.Unique subunit packing in mycobacterial nanoRNase leads to alternate substrate recognitions in DHH phosphodiesterases. NUCLEIC ACIDS RES 2014;42(12):7894-910.
  9. Sahajpal R, Kandoi G, Dhiman H, Raj S; Open Source Drug Discovery Consortium, Scaria V, Bhartiya D, Hasija Y.HGV&TB: a comprehensive online resource on human genes and genetic variants associated with tuberculosis. DATABASE-OXFORD 2014 Dec, doi: 10.1093/database/bau112; 1-11.
  10. Scaria V.Personal genomes, participatory genomics and the anonymity-privacy conundrum.J GENET 2014 Dec;93(3):917-20.
  11. Tiwari MK, Kalia VC, Kang YC, Lee JK.Role of a remote leucine residue in the catalytic function of polyol dehydrogenase.MOL BIOSYST 2014 Dec;10(12):3255-63.
  12. Haque S, Kaushik K, Leonard VE, Kapoor S, Sivadas A, Joshi A, Scaria V, Sivasubbu S.Short Stories on Zebrafish Long Noncoding RNAs (Review). ZEBRAFISH 2014 Dec;11(6):499-508.
  13. Narang A, Jha P, Kumar D, Kutum R, Mondal AK; Indian Genome Variation Consortium, Dash D, Mukerji M.Extensive copy number variations in admixed Indian population of African ancestry: Potential involvement in adaptation. GENOME BIOL EVOL 2014 Nov 13;6(12):3171-81.
  14. Nazreen S, Alam MS, Hamid H, Yar MS, Shafi S, Dhulap A, Alam P, Pasha MA, Bano S, Alam MM, Haider S, Ali Y, Kharbanda C, Pillai KK.Design, synthesis, in silico molecular docking and biological evaluation of novel oxadiazole based thiazolidine-2,4-diones bis-heterocycles as PPAR-gama agonists. EUR J MED CHEM 2014 Nov 24;87:175-85.
  15. Agrawal A, Prakash YS.Obesity, Metabolic Syndrome, and Airway Disease: A Bioenergetic Problem? IMMUNOL ALLERGY CLIN 2014 Nov;34(4):785-796.
  16. Agrawal A.Urban, obese, allergic, and breathless: the shape of things to come? IMMUNOL ALLERGY CLIN 2014 Nov;34(4):xiii-xviii.
  17. Singh M, Kundu S, Reddy M A, Sreekanth V, Motiani RK, Sengupta S, Srivastava A, Bajaj A.Injectable small molecule hydrogel as a potential nanocarrier for localized and sustained in vivo delivery of doxorubicin.NANOSCALE 2014 Nov 7;6(21):12849-55.
  18. Yadav VK, Thakur RK, Eckloff B, Baral A, Singh A, Halder R, Kumar A, Alam MP, Kundu TK, Pandita R, Pandita TK, Wieben ED, Chowdhury S.Promoter-proximal transcription factor binding is transcriptionally active when coupled with nucleosome repositioning in immediate vicinity.NUCLEIC ACIDS RES 2014 Nov;42(15):9602-11.
  19. Singh S, Kumar A, Khare S, Mulchandani A, Rajesh.Single-walled carbon nanotubes based chemiresistive genosensor for label-free detection of human rheumatic heart disease.APPL PHYS LETT. 2014 Nov; 105, 213701 (2014)
  20. Arora G, Sajid A, Singhal A, Joshi J, Virmani R, Gupta M, Verma N, Maji A, Misra R, Baronian G, Pandey AK, Molle V, Singh Y.Identification of Ser/Thr kinase and forkhead associated domains in Mycobacterium ulcerans: characterization of novel association between protein kinase Q and MupFHA.PLOS NEGLECT TROP D 2014 Nov 20;8(11):e3315.
  21. Kumar KA, Lalitha A, Reddy U, Chandak GR, Sengupta S, Raghunath M.Chronic maternal vitamin B12 restriction induced changes in body composition & glucose metabolism in the wistar rat offspring are partly correctable by rehabilitation.PLOS ONE 2014 Nov 14;9(11):e112991.
  22. Chowdhari S, Saini N.hsa-miR-4516 Mediated Downregulation of STAT3/CDK6/UBE2N Plays a Role in PUVA Induced Apoptosis in Keratinocytes. J CELL PHYSIOL. 2014 Nov;229(11):1630-8.
  23. Goyal R, Bansal R, Gandhi RP, Gupta KC.Copolymers of covalently crosslinked linear and branched polyethylenimines as efficient nucleic acid carriers.J BIOMED NANOTECHNOL 2014 Nov;10(11):3269-79.
  24. Dhawan A, Balwani S, Prasad AK, Ghosh B, Parmar VS.Synthesis and Evaluation of 2,2-Dimethylchroman Derivatives as Inhibitors of ICAM-1 Expression on Human Endothelial Cells.J HETEROCYCLIC CHEM 2014 Nov; 51(6): 1712–1719.
  25. Kharbanda C, Alam MS, Hamid H, Javed K, Shafi S, Ali Y, Alam P, Pasha MA, Dhulap A, Bano S, Nazreen S, Haider S.Novel benzenesulfonylureas containing thiophenylpyrazoline moiety as potential antidiabetic and anticancer agents.BIOORG MED CHEM LETT 2014 Nov 15;24(22):5298-303.
  26. Goyal M, Mehndiratta S, Faruq M, Dwivedi MK, Kapoor S.Infantile Onset Alexander Disease with Normal Head Circumference: A Genetically Proven Case Report .J Clin Diag Res. 2014 Nov; 08(11): PD03-04.
  27. Scaria VJoining the long shots: emerging evidence on the role of long noncoding RNAs in rheumatoid arthritis (Editorial).INT J RHEUM DIS 2014 Nov;17(8):831-3.
  28. Faruq M, Srivastava AK, Suroliya V, Kumar D, Garg A, Shukla G, Behari M.Identification of FXTAS presenting with SCA 12 like phenotype in India.PARKINSONISM RELAT D 2014 Oct;20(10):1089-93.
  29. Anwar MJ, Radhakrishna KV, Sharma A, Vohora D.Raloxifene preserves phenytoin and sodium valproate induced bone loss by modulating serum estradiol and TGF-ß3 content in bone of female mice.EUR J PHARM SCI 2014 Oct 1;62:219-26.
  30. Thakur RK, Yadav VK, Kumar A, Singh A, Pal K, Hoeppner L, Saha D, Purohit G, Basundra R, Kar A, Halder R, Kumar P, Baral A, Kumar MM, Baldi A, Vincenzi B, Lorenzon L, Banerjee R, Kumar P, Shridhar V, Mukhopadhyay D, Chowdhury S.Non-metastatic 2 (NME2)-mediated suppression of lung cancer metastasis involves transcriptional regulation of key cell adhesion factor vinculin. NUCLEIC ACIDS RES 2014 Oct;42(18):11589-600.
  31. Pal K, Pletnev AA, Dutta SK, Wang E, Zhao R, Baral A, Yadav VK, Aggarwal S, Krishnaswamy S, Alkharfy KM, Chowdhury S, Spaller MR, Mukhopadhyay D.Inhibition of endoglin-GIPC interaction inhibits pancreatic cancer cell growth.MOL CANCER THER 2014 Oct;13(10):2264-75.
  32. Kalia VC.In search of versatile organisms for quorum-sensing inhibitors: acyl homoserine lactones (AHL)-acylase and AHL-lactonase.FEMS MICROBIOL LETT 2014 Oct;359(2):143.
  33. Faruq M, Narang A, Kumari R, Pandey R, Garg A, Behari M, Dash D, Srivastava A, Mukerji M.Novel mutations in typical and atypical genetic loci through exome sequencing in autosomal recessive cerebellar ataxia families. CLIN GENET 2014 Oct;86(4):335-41.
  34. Reena, Dhall P, Kumar R, Kumar A.Validation of computationally predicted substrates for laccase.BRAZ ARCH BIOL TECHN 2014 Oct; 57 (5): 803-809.
  35. Gupta K, Barua S, Hazarika SN, Manhar AK, Nath D, Karak N, Namsa ND, Mukhopadhyay R, Kalia VC, Mandal M.Green silver nanoparticles: enhanced antimicrobial and antibiofilm activity with effects on DNA replication and cell cytotoxicity.RSC ADV 2014 Oct; 4, 52845-52855.
  36. Vashisht R, Bhat AG, Kushwaha S, Bhardwaj A; OSDD Consortium, Brahmachari SK.Systems level mapping of metabolic complexity in Mycobacterium tuberculosis to identify high-value drug targets.J TRANSL MED 2014 Oct 11;12:263.
  37. Patil KM, Naik RJ, Vij M, Yadav AK, Kumar VA, Ganguli M, Fernandes M.Second generation, arginine-rich (R-X'-R)(4)-type cell-penetrating alpha-omega-alpha-peptides with constrained, chiral ?-amino acids (X') for enhanced cargo delivery into cells.BIOORG MED CHEM LETT 2014 Sep 1;24(17):4198-202.
  38. Mitra A, Ray A, Datta R, Sengupta S, Sarkar S.Cardioprotective Role of P38 MAPK During Myocardial Infarction Via Parallel Activation of a-Crystallin B and Nrf2. J CELL PHYSIOL 2014 Sep;229(9):1272-82.
  39. Sharma A.Bioinformatic analysis revealing association of exosomal mRNAs and proteins in epigenetic inheritance. J THEOR BIOL 2014 Sep 21;357:143-9.
  40. Kumar P, Pant DC, Mehariya S, Sharma R, Kansal A, Kalia VC.Ecobiotechnological strategy to enhance efficiency of bioconversion of wastes into hydrogen and methane.INDIAN J MICROBIOL 2014 Sep;54(3):262-7.
  41. Kaur H, Jajodia A, Grover S, Agarwal N, Baghel R, Kukreti R.Pharmacogenomics of neuropsychiatric disorders: analysis of genetic variability in 162 identified neuroreceptors using 1000 Genomes Project data.PHARMACOGENOMICS 2014 Sep;15(12):1575-87.
  42. Dewangan RP, Joshi S, Kumari S, Gautam H, Yar MS, Pasha S.N-terminally modified linear and branched spermine backbone dipeptidomimetics against planktonic and sessile methicillin-resistant Staphylococcus aureus.ANTIMICROB AGENTS CH 2014 Sep;58(9):5435-47.
  43. Haque AS, Patel KD, Deshmukh MV, Chhabra A, Gokhale RS, Sankaranarayanan R.Delineating the reaction mechanism of reductase domains of Nonribosomal Peptide Synthetases from mycobacteria.J STRUCT BIOL 2014 Sep;187(3):207-14.
  44. Chhabra R, Saini N.microRNAs in cancer stem cells: current status and future directions.TUMOR BIOL 2014 Sep;35(9):8395-405.
  45. Mathew J, Goyal R, Taneja KK, Arora N.Air pollution and respiratory health of school children in industrial, commercial and residential areas of Delhi.AIR QUAL ATMOS HLTH 2014 Sep; 1-2.
  46. Dhasmana N, Singh LK, Bhaduri A, Misra R, Singh Y.Recent Developments in Anti-dotes Against Anthrax. Recent Pat Antiinfect Drug Discov. 2014;9(2):83-96.
  47. Patel SKS, Kumar P, Mehariya S, Purohit HJ, Jung-Kul Lee, Kalia VC.Enhancement in hydrogen production by co-cultures of Bacillus and Enterobacter. (Short Communication)INT J HYDROGEN ENERG 2014 Sep; 39(27): 14663–14668.
  48. Maity S, Basak T, Bhat A, Bhasin N, Ghosh A, Chakraborty K, Sengupta S.Cross-compartment proteostasis regulation during redox imbalance induced ER stress.PROTEOMICS 2014 Aug;14(15):1724-36.
  49. Roshan R, Shridhar S, Sarangdhar MA, Banik A, Chawla M, Garg M, Singh VP, Pillai B.Brain-specific knockdown of miR-29 results in neuronal cell death and ataxia in mice.RNA 2014 Aug;20(8):1287-97.
  50. Bansal P, Saw S, Govindaraj D, Arora N.Intranasal administration of a combination of choline chloride, vitamin C, and selenium attenuates the allergic effect in a mouse model of airway disease. FREE RADICAL BIO MED. 2014 Aug;73:358-65.
  51. Bansal R, Singh AK, Gandhi RP, Pant AB, Kumar P, Gupta KC.Galactomannan-PEI based non-viral vectors for targeted delivery of plasmid to macrophages and hepatocytes.EUR J PHARM BIOPHARM 2014 Aug;87(3):461-71.
  52. Sharma R, Nisakar D, Shivpuri S, Ganguli M.Contrasting effects of cysteine modification on the transfection efficiency of amphipathic peptides.BIOMATERIALS 2014 Aug;35(24):6563-75.
  53. Singh S, Dabur R, Gatne MM, Singh B, Gupta S, Pawar S, Sharma SK, Sharma GL.In vivo efficacy of a synthetic coumarin derivative in a murine model of aspergillosis.PLOS ONE 2014 Aug 20;9(8):e103039.
  54. Kaur H, Jajodia A, Grover S, Baghel R, Gupta M, Jain S, Kukreti R.Genetic variations of PIP4K2A confer vulnerability to poor antipsychotic response in severely ill schizophrenia patients. PLOS ONE 2014 Jul 15;9(7):e102556.
  55. Giri AK, Khan NM, Grover S, Kaur I, Basu A, Tandon N, Scaria V; Consortium IGV; INDICO, Kukreti R, Brahmachari SK, Bharadwaj D.Genetic epidemiology of pharmacogenetic variations in CYP2C9, CYP4F2 and VKORC1 genes associated with warfarin dosage in the Indian population.PHARMACOGENOMICS 2014 Jul;15(10):1337-54.
  56. Gupta M, Sajid A, Sharma K, Ghosh S, Arora G, Singh R, Nagaraja V, Tandon V, Singh Y.HupB, a nucleoid-associated protein of Mycobacterium tuberculosis, is modified by serine/threonine protein kinases in vivo. J BACTERIOL 2014 Jul;196(14):2646-57.
  57. Natarajan VT, Ganju P, Ramkumar A, Grover R, Gokhale RS.Multifaceted pathways protect human skin from UV radiation. NAT CHEM BIOL 2014 Jul;10(7):542-51.
  58. Ghosh S, Sengupta S, Scaria V.Comparative analysis of human mitochondrial methylomes shows distinct patterns of epigenetic regulation in mitochondria. MITOCHONDRION 2014 Sep;18:58-62.
  59. Dhiman SS, Garg G, Sharma J, Kalia VC, Kang YC, Lee JK.Reduction in acute ecotoxicity of paper mill effluent by sequential application of xylanase and laccase.PLOS ONE 2014 Jul 24;9(7):e102581.
  60. Kalia VC, Wood TK, Kumar P.Evolution of Resistance to Quorum-Sensing Inhibitors. MICROB ECOL 2014 Jul;68(1):13-23.
  61. Nazreen S, Alam MS, Hamid H, Yar MS, Dhulap A, Alam P, Pasha MA, Bano S, Alam MM, Haider S, Kharbanda C, Ali Y, Pillai KK.Thiazolidine-2,4-diones derivatives as PPAR-gamma agonists: Synthesis, molecular docking, in vitro and in vivo antidiabetic activity with hepatotoxicity risk evaluation and effect on PPAR-gamma gene expression.BIOORG MED CHEM LETT 2014 Jul 15;24(14):3034-3042.
  62. Jamal S, Scaria V; Open Source Drug Discovery Consortium.Data-mining of potential antitubercular activities from molecular ingredients of traditional Chinese medicines.PeerJ. 2014 Jul 17;2:e476.
  63. Vandana, Singh G, Kumar A.Rheumatic Fever and Rheumatic Heart Disease: A Review on Current Diagnosis Methods and Challenges.IJERSTE 2014 Jul; 3(7) : 293-299.
  64. Pasha Q.Saudi Guidelines on the Diagnosis and Treatment of Pulmonary Hypertension: Genetics of pulmonary hypertension. (Review) ANN THORAC MED 2014 Jul;9(Suppl 1):S16-20.
  65. Idrees MM, Saleemi S, Azem MA, Aldammas S, Alhazmi M, Khan J, Gari A, Aldabbagh M, Sakkijha H, Aldalaan A, Alnajashi K, Alhabeeb W, Nizami I, Kouatli A, Chehab M, Tamimi O, Banjar H, Kashour T, Lopes A, Minai O, Hassoun P, Pasha Q, Mayer E, Butrous G, Bhagavathula S, Ghio S, Swiston J, Boueiz A, Tonelli A, Levy RD, Hoeper M, Levy RD.Saudi guidelines on the diagnosis and treatment of pulmonary hypertension: 2014 updates. (Review)ANN THORAC MED 2014 Jul;9(Suppl 1):S1-S15.
  66. Dash SK, Sharma M, Kumar A, Khare S, Kumar A.Carbon composite-based DNA sensor for detection of bacterial meningitis caused by Neisseria meningitidis.J SOLID STATE CHEM 2014 Jun; 10.1007/s10008-014-2525-9.
  67. Panda G, Basak T, Tanwer P, Sengupta S, Dos Santos VA, Bhatnagar R.Delineating the effect of host environmental signals on a fully virulent strain of Bacillus anthracis using an integrated transcriptomics and proteomics approach. J PROTEOMICS. 2014 Jun 13;105:242-65.
  68. Bhatt N, Khan N, Dash SK, Khare S, Kumar A.nspA Gene as a specific genetic marker for detection of Neisseria meningitidis causing bacterial meningitis.INDIAN J BIOCHEM BIO 2014 Jun; 51(3): 211-14.

Pulications List - 2013| Download PDF

  1. Kalra S, Puniya BL, Kulshreshtha D, Kumar S, Kaur J, Ramachandran S, Singh K.De Novo Transcriptome Sequencing Reveals Important Molecular Networks and Metabolic Pathways of the Plant, Chlorophytum borivilianum.PLOS ONE 2013 Dec 23;8(12):e83336.
  2. Mohan Kulshreshtha N, Kumar R, Begum Z, Shivaji S, Kumar A.Exiguobacterium alkaliphilum sp. nov. isolated from alkaline wastewater drained sludge of a beverage factory.INT J SYST EVOL MICR 2013 Dec;63(Pt 12):4374-9.
  3. Sivasubbu S, Sachidanandan C, Scaria V.Time for the zebrafish ENCODE.J GENET 2013 Dec;92(3):695-701.
  4. Kumar A, Kumar S, Kumar D, Mishra A, Dewangan RP, Shrivastava P, Ramachandran S, Taneja B.The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis.ACTA CRYSTALLOGR D 2013 Dec;69(Pt 12):2543-54.
  5. Jain S, Mandal RS, Anand S, Maiti S, Ramachandran S.Probing the amino acids critical for protein oligomerisation and protein-nucleotide interaction in Mycobacterium tuberculosis PII protein through integration of computational and experimental approaches.BBA-PROTEINS PROTEOM 2013 Dec;1834(12):2736-49.
  6. Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S.Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish. PLOS ONE 2013 Dec 31;8(12):e83616.
  7. Tiwari MN, Agarwal S, Bhatnagar P, Singhal NK, Tiwari SK, Kumar P, Chauhan LKS, Patel DK, Chaturvedi RK, Singh MP, Gupta KCNicotine-encapsulated poly(lactic-co-glycolic) acid nanoparticles improve neuroprotective efficacy against MPTP-induced parkinsonismFREE RADICAL BIO MED 2013 Dec, 65, 704-18
  8. Sonane M, Goyal R, Chowdhuri DK, Ram KR, Gupta KCEnhanced efficiency of P-element mediated transgenesis in Drosophila: Microinjection of DNA complexed with nanomaterialSCI REP-UK 2013 Dec, 3(3048), 1-5
  9. Sharma A.Transgenerational epigenetic inheritance: Focus on soma to germline information transfer. Prog Biophys Mol Biol. 2013 Dec;113(3):439-46.
  10. Mehla K, Balwani S, Agrawal A, Ghosh B.Ethyl gallate attenuates acute lung injury through Nrf2 signaling.Biochimie. 2013 Dec;95(12):2404-14.
  11. Raj D, Lodha R, Pandey A, Mukherjee A, Agrawal A, Kabra SK; New Delhi Childhood Asthma Study Group.Aeroallergen Sensitization in Childhood Asthmatics in North India. Ind J Pedi. 2013 Dec;50(12):1113-8.
  12. Murthy D, Attri KS, Gokhale RS.Network, nodes and nexus: systems approach to multitarget therapeutics. Curr Opin Biotechnol. 2013 Dec;24(6):1129-36.
  13. Kumar P, Patel SK, Lee JK, Kalia VC.Extending the limits of Bacillus for novel biotechnological applications.Biotechnol Adv. 2013 Dec;31(8):1543-61.
  14. Kumar A, Kumar S, Kumar D, Mishra A, Dewangan RP, Shrivastava P, Ramachandran S, Taneja B.Crystal structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis.Acta Crystallogr D Biol Crystallogr. 2013 Dec;69(Pt 12):2543-54.
  15. Rajiv P, Nitesh K, Raj K, Gautam HK.Staphylococcus epidermidis in Human Skin Microbiome associated with Acne: A Cause of Disease or Defence?RES J BIOTECHNOL 2013 Dec; 8(12), 78-82.
  16. Walawalkar YD, Phadke R, Noronha S, Patankar S, Pillai BEngineering whole-cell biosensors to evaluate the effect of osmotic conditions on bacteriaANN MICROBIOL 2013 Dec, 63(4), 1283-1290
  17. Ruhal A, Rana JS, Ruhal P, Kumar A.Advancement in biosensor with nanotechnology.INT J TECH RES ENGG. 2013 Dec; 1(4): 167-173.
  18. Ruhal A, Rana JS, Ruhal P, Kumar A, Ruhil M.Antimicrobial nanocomposite of silver and gelatine nanofibers for medical applicationsINT J TECH RES ENGG. 2013 Dec; 1(4): 177-182.
  19. Nahar P.Enzyme-linked immunosorbent assay procedure at higher temperature enhances speed of the assay.NAT PRO EXCH. 2013 Dec; doi:10.1038/protex.2013.091.
  20. Nahar P.Covalent immobilization of proteins onto photoactivated polystyrene microtiter plates for enzyme-linked immunosorbent assay procedures.NAT PRO EXCH. 2013 Dec; doi:10.1038/protex.2013.090.
  21. Nahar P.A novel enzyme-linked immunosorbent assay procedure in one hour by pressure incubation.NAT PRO EXCH. 2013 Dec; doi:10.1038/protex.2013.092.
  22. Mittal A, Gahlaut A, Sharma GL, Dabur R.Antifungal Treatments Delineate a Correlation between Cathepsins and Cytokines in Murine Model of Invasive Aspergillosis.INDIAN J PHARM SCI 2013 Nov;75(6):688-99.
  23. Panda S, Biswas S, Kar A.Trigonelline isolated from fenugreek seed protects against isoproterenol-induced myocardial injury through down-regulation of Hsp27 and aB-crystallin.NUTRITION 2013 Nov-Dec;29(11-12):1395-403.
  24. Agarwala P, Pandey S, Maiti S.G-quadruplexes as tools for synthetic biology.CHEMBIOCHEM 2013 Nov 4;14(16):2077-81.
  25. Dey D, Kumar S, Maiti S, Dhara D.Stopped-flow kinetic studies of poly(amidoamine) dendrimer-calf thymus DNA to form dendriplexes.J PHYS CHEM B 2013 Nov 7;117(44):13767-74.
  26. Yadav AK, Kadimi PK, Kumar D, Dash D.ProteoStats--a library for estimating false discovery rates in proteomics pipelines.Bioinformatics. 2013 Nov 1;29(21):2799-800.
  27. Kumar D, Yadav AK, Kadimi PK, Nagaraj SH, Grimmond SM, Dash D.Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using Genosuite, an automated multi-algorithmic pipeline.Mol Cell Proteomics. 2013 Nov;12(11):3388-97.
  28. Puniya BL, Kulshreshtha D, Verma SP, Kumar S, Ramachandran S.Integrated gene co-expression network analysis in the growth phase of Mycobacterium tuberculosis reveals new potential drug targets.Mol Biosyst. 2013 Nov;9(11):2798-815.
  29. Jamal S, Scaria VCheminformatic models based on machine learning for pyruvate kinase inhibitors of Leishmania mexicanaBMC BIOINFORMATICS 2013 Nov, 14(329)
  30. Vellarikkal SK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K; Open Source Drug Discovery Consortium, Chauhan DS, Sivasubbu S, Scaria V.Draft Genome Sequence of a Multidrug-Resistant Clinical Isolate of Mycobacterium tuberculosis Belonging to a Novel Spoligotype.Genome Announc. 2013 Nov 21;1(6). pii: e00965-13.
  31. Vellarikkal SK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K; Open Source Drug Discovery Consortium, Chauhan DS, Sivasubbu S, Scaria V.Draft Genome Sequence of Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolate OSDD515, Belonging to the Uganda I Genotype.Genome Announc. 2013 Nov 21;1(6). pii: e00750-13.
  32. Karuthedath Vellarikkal S, Vir Singh A, Kumar Singh P, Garg P, Mohan Katoch V, Katoch K; Open Source Drug Discovery Consortium, Chauhan DS, Scaria V, Sivasubbu S.Draft Genome Sequence of an Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolate of the Ural Strain OSDD493.Genome Announc. 2013 Nov 7;1(6). pii: e00928-13.
  33. Nahar P.Rapid enzyme-linked immunosorbent assay technique by ultrasound waves in a sonicator bath.NAT PRO EXCH. 2013 Nov; doi:10.1038/protex.2013.086.
  34. Nahar P.Light-Induced Activation of an Inert Surface for Covalent Immobilization of a Protein Ligand.NAT PRO EXCH. 2013 Nov; doi:10.1038/protex.2013.086.
  35. Parween S, Nahar P.Image-based ELISA on an activated polypropylene microtest plate--a spectrophotometer-free low cost assay technique.BIOSENS BIOELECTRON 2013 Oct 15;48:287-92.
  36. Kumar S, Maiti S.The effect of N-acetylation and N-methylation of lysine residue of Tat peptide on its interaction with HIV-1 TAR RNA.PLOS ONE 2013 Oct 17;8(10):e77595.
  37. Bhatt SP, Nigam P, Misra A, Guleria R, Pandey RM, Pasha MAQGenetic Variation in the Patatin-Like Phospholipase Domain-Containing Protein-3 (PNPLA-3) Gene in Asian Indians with Nonalcoholic Fatty Liver DiseaseMETAB SYNDR RELAT D 2013 Oct, 11(5), 329-35
  38. Arora G, Sajid A, Arulanandh MD, Misra R, Singhal A, Kumar S, Singh LK, Mattoo AR, Raj R, Maiti S, Basu-Modak S, Singh Y.Zinc regulates the activity of kinase-phosphatase pair (BasPrkC/BasPrpC) in Bacillus anthracis.Biometals. 2013 Oct;26(5):715-30.
  39. Chauhan P, Reddy V, Singh R, Jaisinghani N, Gandotra S, Tyagi AK.Secretory phosphatases deficient mutant of Mycobacterium tuberculosis imparts protection at the primary site of infection in guinea pigs.PLoS One. 2013 Oct 18;8(10):e77930.
  40. Basu S, Sachidanandan C.Zebrafish: A Multifaceted Tool for Chemical Biologists.Chem Rev. 2013 Oct 9;113(10):7952-80.
  41. Kaur H, Grover S, Kukreti R.Concept of Pharmacogenomics and Future Considerations.CNS Neurosci Ther. 2013 Oct;19(10):842-4.
  42. Ahmad S, Kumar KA, Basak T, Bhardwaj G, Yadav DK, Lalitha A, Chandak GR, Raghunath M, Sengupta S.PPAR signaling pathway is a key modulator of liver proteome in pups born to vitamin B12 deficient rats. J Proteomics. 2013 Oct 8;91:297-308.
  43. Santhosh RS, Tuteja A, Basu S, Subramanian A, Sundharraman S, Kumari A, Vaidhyanathan M, Mohan A, Mahalakshmi R, Shankaranarayanan S, Chordia S, Divya G, Virmani A, Joshi K, Yadav SK, Charyulu LN, Savitha R, Ajithavalli C, Rajendran D, Raithatha K, Alam S, Gandhi S, Kamath D, Sowmya S, Wani TH, Ahmad SS, Vijayalakshmi M, Bhardwaj A, Subodh SOpen access Mycobacterium tuberculosis clone repository: a community resource by OSDD membersCURR SCI INDIA 2013 Nov, 105(10)
  44. Motiani RK, Stolwijk JA, Newton RL, Zhang XX, Trebak MEmerging roles of Orai3 in pathophysiologyCHANNELS 2013 Sep-Oct, 7(5), 392-401
  45. Agrawal A, Agrawal A, Bansal V, Pandit M.A systematic approach to interpretation of heterogeneous lung attenuation on computed tomography of the chest.Lung India. 2013 Oct;30(4):327-334.
  46. Agrawal A, Sood A, Linneberg A, Ghosh B.Mechanistic understanding of the effect of obesity on asthma and allergy.J ALLERGY. 2013; Oct 2013: 598904.
  47. Nahar P, Parween S.Desktop scanner replaces spectrophotometer for low cost and rapid ELISA technique.NAT PRO EXCH. 2013 Oct; doi:10.1038/protex.2013
  48. Faruq M, Narang A, Kumari R, Dash D, Srivastava AK, Mukerji M.Genetic deconvolution of cerebellar ataxias in India through next generation sequencing: Novel mutations in atypical and typical genetic loci.J NEUROL SCI 2013 Oct; 333(1), e142.
  49. Pundir CS, Yadav S, Kumar A.Creatinine sensors - Review.TRAC-TREND ANAL CHEM 2013 Oct; 50, 42-52.
  50. Kalia VC.The visionary: prof. Carl R. Woese.INDIAN J MICROBIOL 2013 Sep;53(3):245-6.
  51. Bhushan A, Joshi J, Shankar P, Kushwah J, Raju SC, Purohit HJ, Kalia VC.Development of genomic tools for the identification of certain Pseudomonas up to species level.Ind J Microbiol. 2013 Sep; 53(3): 253-263.
  52. Tripathi SK, Gupta KC, Kumar P.Polyethyleneglycol crosslinked N-(2-hydroxyethyl)-polyethylenimine nanoparticles as efficient non-viral vectors for DNA and siRNA delivery in vitro and in vivo.Mol Biosyst. 2013 Sep;9(9):2322-30.
  53. Pore SK, Choudhary A, Rathore B, Ganguly A, Sujitha P, Kumar CG, Agawane SB, Kumar JM, Scaria V, Pillai B, Banerjee R.Hsp90-targeted miRNA-liposomal formulation for systemic antitumor effect.Biomaterials. 2013 Sep;34(28):6804-17.
  54. Dash SK, Sharma M, Khare S, Kumar A.rmpM genosensor for detection of human brain bacterial meningitis in cerebrospinal fluid.APPL BIOCHEM BIOTECH 2013 Sep;171(1):198-208.
  55. Santhiya D, Alajangi HK, Anjum F, Murugavel S, Ganguli MBio-inspired synthesis of microporous bioactive glass-ceramic using CT-DNA as a templateJ MAT CHEM B 2013 Sep, 1(45), 6329-6338
  56. Upadhyay RD, Yadav AK, Sonawane S, Goankar R, Dash D, Balasinor NH.Differential Proteomic and Phospho-proteomic Analysis of Normal versus Failed Spermiation in Adult Rats by Label-Free LC-MS/MS.J ANAL BIOANAL TECH. 2013 Sep; 4(4); 1-9.
  57. Singh S, Prakash YS, Linneberg A, Agrawal A.Insulin and the Lung: Connecting Asthma and Metabolic Syndrome.J ALLERGY. 2013; Sep 2013: 627384.
  58. Leishangthem GD, Mabalirajan U, Singh VP, Agrawal A, Ghosh B, Dinda AK.Ultrastructural changes of airway in murine models of allergy and diet-induced metabolic syndrome.ISRN ALLERGY. 2013 Sep 10;2013:261297.
  59. Anurag M, Singh GP, Dash D.Intrinsically Disordered Proteins: Revisiting The Structure-Function Paradigm.(Book Chapter) 2013 Sep, Biomolecular Forms and Functions, A celebration of 50 years of Ramachandran Map.
  60. Ghosh S, Pradhan SK, Kar A, Chowdhury S, Dasgupta D.Molecular basis of recognition of quadruplexes human telomere and c-myc promoter by the putative anticancer agent sanguinarine.Biochim Biophys Acta. 2013 Aug;1830(8):4189-201.
  61. Agarwal P, Srivastava R, Srivastava AK, Ali S, Datta M.miR-135a targets IRS2 and regulates insulin signaling and glucose uptake in the diabetic gastrocnemius skeletal muscle.BBA - Mol Basis Dis. 2013 Aug;1832(8):1294-303.
  62. Salleh MZ, Teh LK, Lee LS, Ismet RI, Patowary A, Joshi K, Pasha A, Ahmed AZ, Janor RM, Hamzah AS, Adam A, Yusoff K, Hoh BP, Hatta FH, Ismail MI, Scaria V, Sivasubbu S.Systematic pharmacogenomics analysis of a malay whole genome: proof of concept for personalized medicine.PLoS ONE. 2013 Aug 23;8(8):e71554.
  63. Adlakha YK, Khanna S, Singh R, Singh VP, Agrawal A, Saini N.Pro-apoptotic miRNA-128-2 modulates ABCA1, ABCG1 and RXRa expression and cholesterol homeostasis.Cell Death Dis. 2013 Aug 29;4:e780.
  64. Banerjee D, Banerjee A, Mookherjee S, Vishal M, Mukhopadhyay A, Sen A, Basu A, Ray K.Mitochondrial genome analysis of primary open angle glaucoma patients.PLoS ONE. 2013 Aug 5;8(8):e70760.
  65. Gupta M, Moily N, Kaur H, Jajodia A, Jain S, Kukreti R.Identifying a predictive model for response to atypical antipsychotic monotherapy treatment in south Indian schizophrenia patients.Genomics. 2013 Aug;102(2):131-5.
  66. Srivastav R, Singh A, Jangir PK, Kumari C, Muduli S, Sharma R.Genome Sequence of Staphylococcus massiliensis Strain S46, Isolated from the Surface of Healthy Human Skin.Genome Announc. 2013 Aug 8;1(4).
  67. Karuthedath Vellarikkal S, Patowary A, Singh M, Periwal V, Singh AV, Singh PK, Garg P, Mohan Katoch V, Katoch K, Jangir PK, Sharma R; Open Source Drug Discovery Consortium, Chauhan DS, Scaria V, Sivasubbu S.Draft Genome Sequence of a Clinical Isolate of Multidrug-Resistant Mycobacterium tuberculosis East African Indian Strain OSDD271.Genome Announc. 2013 Aug 1;1(4).
  68. Bhartiya D, Pal K, Ghosh S, Kapoor S, Jalali S, Panwar B, Jain S, Sati S, Sengupta S, Sachidanandan C, Raghava GPS, Sivasubbu S, Scaira V.lncRNome: a comprehensive knowledgebase of human long noncoding RNAs.Database (Oxford). 2013 Jul 11;2013:bat034.
  69. Kumar S, Maiti S.Effect of different arginine methylations on the thermodynamics of Tat peptide binding to HIV-1 TAR RNA.Biochimie. 2013 Jul;95(7):1422-31.
  70. Vashisht R, Bhardwaj A, Osdd Consortium, Brahmachari SK.Social networks to biological networks: systems biology of Mycobacterium tuberculosis.Mol Biosyst. 2013 Jul;9(7):1584-93.
  71. Sharma S, Jain S, Nair GN, Ramachandran S.Capsicum annuum enhances l-lactate production by Lactobacillus acidophilus: Implication in curd formation. J Dairy Sci. 2013 Jul;96(7):4142-8.
  72. Sinha A, Yadav AK, Chakraborty S, Kabra SK, Lodha R, Kumar M, Kulshreshtha A, Sethi T, Pandey R, Malik G, Laddha S, Mukhopadhyay A, Dash D, Ghosh B, Agrawal A.Exosome-enclosed microRNAs in exhaled breath hold potential for biomarker discovery in patients with pulmonary diseases.J Allergy Clin Immun. 2013 Jul;132(1):219-22.
  73. Singhal A, Arora G, Sajid A, Maji A, Bhat A, Virmani R, Upadhyay S, Nandicoori VK, Sengupta S, Singh Y.Regulation of homocysteine metabolism by Mycobacterium tuberculosis S-adenosylhomocysteine hydrolase.Sci Rep. 2013 Jul;3:2264.
  74. Meena LS, Chopra P, Vishwakarma RA, Singh Y.Biochemical characterization of an S-adenosyl-l-methionine-dependent methyltransferase (Rv0469) of Mycobacterium tuberculosis.Biol Chem. 2013 Jul;394(7):871-7.
  75. Mishra A, Vij M, Kumar D, Taneja V, Mondal AK, Bothra A, Rao V, Ganguli M, Taneja B.Integration host factor of Mycobacterium tuberculosis, mIHF, compacts DNA by a bending mechanism.PLoS ONE. 2013 Jul 26;8(7):e69985.
  76. Meena LS, Kolattukudy PE.Expression and characterization of Rv0447c product, potentially the methyltransferase involved in tuberculostearic acid biosynthesis in Mycobacterium tuberculosis.Biotechnol Appl Bioc. 2013 Jul;60(4):412-6.
  77. Sharma R, Shivpuri S, Anand A, Kulshreshtha A, Ganguli M.Insight into the Role of Physicochemical Parameters in a Novel Series of Amphipathic Peptides for Efficient DNA Delivery. Mol Pharmaceut. 2013 Jul 1;10(7):2588-600.
  78. Kumar S, Puniya BL, Parween S, Nahar P, Ramachandran S.Identification of novel adhesins of M. tuberculosis H37Rv using integrated approach of multiple computational algorithms and experimental analysis.PLoS ONE. 2013 Jul 29;8(7):e69790.
  79. Baral A, Kumar P, Pathak R, Chowdhury S.Emerging trends in G-quadruplex biology - role in epigenetic and evolutionary events. Mol Biosyst. 2013 Jul;9(7):1568-75.
  80. Pathak R, Kumar R, Gautam HK.Cross-Species Induction and Enhancement of Antimicrobial Properties in Response to Gamma Irradiation in Exiguobacterium sp. HKG 126.INDIAN J MICROBIOL 2013 Jun;53(2):130-6.
  81. Agrawal A, Bhattacharya J, Baranwal N, Bhatla S, Dube S, Sardana V, Gaur DR, Balazova D, Brahmachari SK.Integrating health care delivery and data collection in rural India using a rapidly deployable ehealth center.Plos Med. 2013 Jun;10(6):e1001468.
  82. Soni K, Gupta S, Gokhale SS, Dey R, Gunjal AD, Kumar VA, Pillai B.Detection and Knockdown of MicroRNA-34a Using Thioacetamido Nucleic Acid.Nucleic Acid Ther. 2013 Jun;23(3):195-202.
  83. Naik RJ, Chatterjee A, Ganguli M.Different roles of cell surface and exogenous glycosaminoglycans in controlling gene delivery by arginine-rich peptides with varied distribution of arginines.BBA - Biomembranes. 2013 Jun;1828(6):1484-93.
  84. Tripathi SK, Gupta S, Gupta KC, Kumar P.Efficient DNA and siRNA delivery with biodegradable cationic hyaluronic acid conjugates.RSC Advances. 2013 Jun; 3(36): 15687-15697
  85. Verma G, Bhatia H, Datta M.JNK1/2 regulates ER-mitochondrial Ca2+ cross-talk during IL-1ß-mediated cell death in RINm5F and human primary ß-cells.Mol Biol Cell. 2013 Jun;24(12):2058-71.
  86. Ranjan A, Kaur N, Tiwari V, Singh Y, Chaturvedi MM, Tandon V.3,4-Dimethoxyphenyl bis-benzimidazole derivative, mitigates radiation-induced DNA damage.RADIAT RES 2013 Jun;179(6):647-62.
  87. Pandey S, Agarwala P, Maiti S.Effect of loops and G-quartets on the stability of RNA G-quadruplexes.J Phys Chem B. 2013 Jun 13;117(23):6896-905.
  88. Ghosh S, Kar A, Chowdhury S, Dasgupta D.Ellipticine binds to a human telomere sequence: an additional mode of action as a putative anticancer agent?Biochemistry. 2013 Jun 18;52(24):4127-37.
  89. Dash SK, Sharma M, Khare S, Kumar A.Omp genosensor for detection of human brain bacterial meningitis.Biotechnol Lett. 2013 Jun;35(6):929-35.
  90. Arif M, Tripathi SK, Gupta KC, Kumar P.Self-assembled amphiphilic phosphopyridoxyl-polyethylenimine polymers exhibit high cell viability and gene transfection efficiency in vitro and in vivo.J Mater Chem B. 2013 Jun; 1(48): 4020-4031.
  91. Kalia VC.The race for visibility and value.INDIAN J MICROBIOL 2013 Jun;53(2):129.
  92. Singla D, Dhanda SK, Chauhan JS, Bhardwaj A, Brahmachari SK, Raghava GPSOpen Source Software and Web Services for Designing Therapeutic MoleculesCURR TOP MED CHEM 2013 May, 13(10), 1172-91
  93. Kumar R, Kohli S, Alam P, Barkotoky R, Gupta M, Tyagi S, Jain SK, Pasha MAQ.Interactions between the FTO and GNB3 Genes Contribute to Varied Clinical Phenotypes in Hypertension.PLoS ONE. 2013 May 14;8(5):e63934.
  94. Bose D, Jayaraj GG, Kumar S, Maiti S.A Molecular-Beacon-Based Screen for Small Molecule Inhibitors of miRNA Maturation.ACS Chem Biol. 2013 May 17;8(5):930-8.
  95. Grover S, Kukreti R.A systematic review and meta-analysis of the role of ABCC2 variants on drug response in patients with epilepsy.Epilepsia. 2013 May;54(5):936-45.
  96. Grover S, Kukreti R.HLA Allelic Variants and Carbamazepine-Induced Hypersensitivity.Clin Pharmacol Ther. 2013 May;93(5):386-7.
  97. Kasera R, Singh AB, Lavasa S, Nagendra K, Arora N.Purification and immunobiochemical characterization of a 31 kDa cross-reactive allergen from Phaseolus vulgaris (kidney bean).PLoS ONE. 2013 May 9;8(5):e63063.
  98. Singh GP, Dash D.Electrostatic mis-interactions cause overexpression toxicity of proteins in E. coli.PLoS ONE. 2013 May 29;8(5):e64893.
  99. Silla Y, Sundaramoorthy E, Talwar P, Sengupta S.S-linked protein homocysteinylation: identifying targets based on structural, physicochemical and protein-protein interactions of homocysteinylated proteins.Amino Acids. 2013 May;44(5):1307-16.
  100. Kumar A, Dhall P, Kumar RBIOLOGICAL AOX REMOVAL OF PULP MILL PLANT EFFLUENT BY PSEUDOMONAS AERUGINOSA - BENCH STUDYJ ENVIRON ENG LANDSC 2013 May, 21(4), 296-304
  101. Majhi MC, Behera AK, Kulshreshtha NM, Mahmooduzafar, Kumar R, Kumar AExtremeDB: A Unified Web Repository of Extremophilic Archaea and BacteriaPLOS ONE 2013 May, DOI: 10.1371
  102. Mathur SK, Jain P, Jindal D, Agarwal A, Sharma A.Transcriptomic Analysis of Visceral Adipose from Healthy and Diabetic Obese Subjects.Ind J. Endocrinol. Metab. 2013 May; 17(3): 446-450.
  103. Mabalirajan U, Ghosh B.Mitochondrial dysfunction in metabolic syndrome and asthma.J Allergy (Cairo). 2013;2013:340476.
  104. Bhatt SP, Nigam P, Misra A, Guleria R, Qadar Pasha MA.Independent associations of low 25 hydroxy vitamin D and high parathyroid hormonal levels with nonalcoholic fatty liver disease in Asian Indians residing in north India.ATHEROSCLEROSIS 2013;230(1):157-63.
  105. Kulshreshtha A, Ahmad T, Agrawal A, Ghosh B.Proinflammatory role of epithelial cell-derived exosomes in allergic airway inflammation.J Allergy Clin Immun. 2013 Apr;131(4):1194-203, 1203.e1-14.
  106. Sabareesh V, Singh G.Mass spectrometry based lipid(ome) analyzer and molecular platform: a new software to interpret and analyze electrospray and/or matrix-assisted laser desorption/ionization mass spectrometric data of lipids: a case study from Mycobacterium tuberculosis.J Mass Spectrom. 2013 Apr;48(4):465-77.
  107. K S, Jalali S, Scaria V, Bhardwaj A.MitoLSDB: A Comprehensive Resource to Study Genotype to Phenotype Correlations in Human Mitochondrial DNA Variations.PLoS ONE. 2013 Apr 9;8(4):e60066.
  108. Yadav S, Joshi S, Pasha MAQ, Pasha S.Antimicrobial activity and mode of action of novel, N-terminal tagged tetra-peptidomimetics.MedChemComm. 2013 Apr; (4): 874-880.
  109. Mitra A, Basak T, Datta K, Naskar S, Sengupta S, Sarkar S.Role of a-crystallin B as a regulatory switch in modulating cardiomyocyte apoptosis by mitochondria or endoplasmic reticulum during cardiac hypertrophy and myocardial infarction.Cell Death Dis. 2013 April; 4(4): e582.
  110. Mabalirajan U, Ahmad T, Rehman R, Leishangthem GD, Dinda AK, Agrawal A, Ghosh B, Sharma SK.Baicalein Reduces Airway Injury in Allergen and IL-13 Induced Airway Inflammation.PLoS ONE. 2013 Apr 30;8(4):e62916.
  111. Laddha SV, Nayak S, Paul D, Reddy R, Sharma C, Jha P, Hariharan M, Agrawal A, Chowdhury S, Sarkar C, Mukhopadhyay A.Genome-wide analysis reveals downregulation of miR-379/miR-656 cluster in human cancers.Biol Direct. 2013 Apr 24;8(1):10.
  112. Mahato M, Sharma AK, Kumar P.Synthesis and characterization of N-ethyl-N'-(3-dimethylaminopropyl)-guanidinyl-polyethylenimine polymers and investigation of their capability to deliver DNA and siRNA in mammalian cells.Colloids Surf B Biointerfaces. 2013 Apr 9;109C:197-203.
  113. Soni K, Choudhary A, Patowary A, Singh AR, Bhatia S, Sivasubbu S, Chandrasekaran S, Pillai B.miR-34 is maternally inherited in Drosophila melanogaster and Danio rerio.Nucleic Acids Res. 2013 Apr 1;41(8):4470-80.
  114. Chaudhary S, Seth MK, Vats ID, Kumar K, Biswas P, Karar J, Hussain ME, Pasha MA, Pasha S.Sulfur-containing Angiotensin-converting enzyme inhibitor 3-thienylalanine-ornithyl-proline activates endothelial function and expression of genes involved in Renin-Angiotensin system.J Cardiovasc Pharmacol. 2013 Apr;61(4):311-7.
  115. Patel SKS, Kalia VCIntegrative Biological Hydrogen Production: An OverviewINDIAN J MICROBIOL 2013 Mar, 53(1), 3-10
  116. Ray L, Kumar P, Gupta KC.The activity against Ehrlich's ascites tumors of doxorubicin contained in self assembled, cell receptor targeted nanoparticle with simultaneous oral delivery of the green tea polyphenol epigallocatechin-3-gallate.Biomaterials. 2013 Apr;34(12):3064-76.
  117. Mahato M, Kumar P, Sharma AK.Amphiphilic polyethylenimine polymers mediate efficient delivery of DNA and siRNA in mammalian cells. Mol Biosyst. 2013 Apr 5;9(4):780-91.a
  118. Mishra A, Mohammad G, Thinlas T, Pasha MA.EGLN1 variants influence expression and SaO2 levels to associate with high-altitude pulmonary oedema and adaptation.Clin Sci. 2013 Apr;124(7):479-89.
  119. Horikoshi N, Kumar P, Sharma GG, Chen M, Hunt C, Westover K, Chowdhury S, Pandita TK.Genome-wide distribution of histone H4 Lysine 16 acetylation sites and their relationship to gene expression.Genome Integr. 2013 Apr 12;4(1):3.
  120. Gautam HK, Gupta VK, Gaur RK.Molecular Biology of Bacteria.(Book Chapter) 2013 Nova Publications, USA (published).
  121. Singh M, Kumar P, Patel SKS, Kalia VC.Production of polyhydroxyalkanoate co-polymer by Bacillus thuringiensis.Ind J Microbiol. 2013 Jan-Mar; 53(1): 77-83.
  122. Resmi MS, Verma P, Gokhale RS, Soniya EV.Identification and characterization of a Type III polyketide synthase involved in quinolone alkaloid biosynthesis from Aegle marmelos Correa.J Biol Chem. 2013 Mar 8;288(10):7271-81.
  123. Joshi J, Barik TK, Shrivastava N, Dimri M, Ghosh S, Mandal RS, Ramachandran S, Kumar IPCycloxygenase-2 (COX-2) - A Potential Target for Screening of Small Molecules as Radiation Countermeasure Agents: An In Silico StudyCOMPUT AIDED DESIGN 2013 Mar, 9(1), 35-45
  124. Jovicic A, Roshan R, Moisoi N, Pradervand S, Moser R, Pillai B, Luthi-Carter RComprehensive expression analyses of neural cell-type-specific miRNAs identify new determinants of the specification and maintenance of neuronal phenotypes.J NEUROSCI 2013 Mar, 33(12), 5127-37
  125. Adlakha YK, Saini N.miR-128 exerts pro-apoptotic effect in a p53 transcription-dependent and -independent manner via PUMA-Bak axis.Cell Death Dis. 2013 Mar 14;4:e542.
  126. Tabassum R, Chauhan G, Dwivedi OP, Mahajan A, Jaiswal A, Kaur I, Bandesh K, Singh T, Mathai BJ, Pandey Y, Chidambaram M, Sharma A, Chavali S, Sengupta S, Ramakrishnan L, Venkatesh P, Aggarwal SK, Ghosh S, Prabhakaran D, Srinath RK, Saxena M, Banerjee M, MGenome-wide Association Study for Type 2 Diabetes in Indians Identifies a New Susceptibility Locus at 2q21.Diabetes. 2013 Mar;62(3):977-86.
  127. Somkuti J, Jain S, Ramachandran S, L ászló Smeller.Folding–unfolding transitions of Rv3221c on the pressure–temperature plane.HIGH PRESSURE RES 2013 Mar; 33(2): 250-257.
  128. Petersen DC, Libiger O, Tindall EA, Hardie RA, Hannick LI, Glashoff RH, Mukerji M; Indian Genome Variation Consortium, Fernandez P, Haacke W, Schork NJ, Hayes VM.Complex patterns of genomic admixture within southern Africa.PloS Gent. 2013 Mar;9(3):e1003309.
  129. Kasera R, Niphadkar PV, Saran A, Mathur C, Singh AB.First case report of anaphylaxis caused by Rajgira seed flour (Amaranthus paniculatus) from India: a clinico-immunologic evaluation.Asian Pac J Allergy. 2013 Mar;31(1):79-83.
  130. Mabalirajan U, Rehman R, Ahmad T, Kumar S, Leishangthem GD, Singh S, Dinda AK, Biswal S, Agrawal A, Ghosh B.12/15-lipoxygenase expressed in non-epithelial cells causes airway epithelial injury in asthma.Sci Rep. 2013 Mar;3:1540.
  131. Patowary A, Purkanti R, Singh M, Chauhan R, Singh AR, Swarnkar M, Singh N, Pandey V, Torroja C, Clark MD, Kocher JP, Clark KJ, Stemple DL, Klee EW, Ekker SC, Scaria V, Sivasubbu S.A sequence-based variation map of zebrafish.Zebrafish. 2013 Mar;10(1):15-20.
  132. Thukral L, Brown AJLipid-Protein Interactions in Membranes: implications for health and diseaseCLIN LIPIDOL 2013, 8(1), 43–45
  133. Tripathi SK, Singh VP, Gupta KC, Kumar P.Hydrophobic and membrane permeable polyethylenimine nanoparticles efficiently deliver nucleic acids in vitro and in vivo.J Mater Chem B. 2013 Mar; 1(48): 2515-2524.
  134. Kalia VCKnow Your INJM Editor in-Chief (April-2013).INDIAN J MICROBIOL 2013 Mar;53(1):123.
  135. Kalia VCMessage from the incoming editor in chief.INDIAN J MICROBIOL 2013 Mar;53(1):117.
  136. Kalia VC.Quorum sensing inhibitors: An overview.Biotechnol Adv. 2013 Mar;31(2):224-45.
  137. Venugopalan V, Tripathi SK, Nahar P, Saradhi PP, Das RH, Gautam HK.Characterization of Canthaxanthin Isomers Isolated from a New Soil Dietzia sp. and Their Antioxidant Activities.J Microbiol Biotechn. 2013 Feb;23(2):237-45.
  138. Chattopadhyay S, Basak T, Nayak MK, Bhardwaj G, Mukherjee A, Bhowmik R, Sengupta S, Chakrabarti O, Chatterjee NS, Chalwa-Sarkar M.Identification of Cellular Calcium binding protein Calmodulin as a regulator of Rotavirus A infection during comparative proteomic study.PLoS ONE. 2013 Feb; 8(2): e56655: 1-15.
  139. Mondal P, Datta S, Maiti GP, Baral A, Jha GN, Panda CK, Chowdhury S, Ghosh S, Roy B, Roychoudhury S.Comprehensive SNP scan of DNA repair and DNA damage response genes reveal multiple susceptibility loci conferring risk to tobacco associated leukoplakia and oral cancerPLoS ONE. 2013;8(2):e56952.
  140. Sawaya S, Bagshaw A, Buschiazzo E, Kumar P, Chowdhury S, Black MA, Gemmell N.Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements.PLoS ONE. 2013;8(2):e54710.
  141. Agarwala P, Pandey S, Mapa K, Maiti S.The G-Quadruplex Augments Translation in the 5' Untranslated Region of Transforming Growth Factor ß2.Biochemistry. 2013 Mar 5;52(9):1528-38.
  142. Tiwari S, Kumar V, Jayaraj GG, Maiti S, Mapa K.Unique Structural Modulation of a Non-Native Substrate by Cochaperone DnaJ.Biochemistry. 2013 Feb 12;52(6):1011-8.
  143. Tanwar VS, Chand MP, Kumar J, Garg G, Seth S, Karthikeyan G, Sengupta S.Common variant in FUT2 gene is associated with levels of vitamin B(12) in Indian population.Gene. 2013 Feb 15;515(1):224-8.
  144. Mandal AK, Pandey R, Jha V, Mukerji M.Transcriptome-wide expansion of non-coding regulatory switches: evidence from co-occurrence of Alu exonization, antisense and editing.Nucleic Acids Res. 2013 Feb 1;41(4):2121-37.
  145. Biswas S, Sharma S, Saroha A, Bhakuni DS, Malhotra R, Zahur M, Oellerich M, Das HR, Asif AR.Identification of novel autoantigen in the synovial fluid of rheumatoid arthritis patients using an immunoproteomics approach.PLoS ONE. 2013;8(2):e56246.
  146. Ahmed V, Kumar J, Kumar M, Chauhan MB, Vij M, Ganguli M, Chauhan NS.Synthesis, characterization of penicillin G capped silver nanoconjugates to combat ß-lactamase resistance in infectious microorganism.J Biotechnol. 2013 Feb 20;163(4):419-24.
  147. Dash SK, Sharma M, Khare S, Kumar A.Quick diagnosis of human brain meningitis using omp85 gene amplicon as a genetic marker.Ind J Microbiol. 2013 Feb; DOI : 10.1007/s12088-013-0371-6.
  148. Mabalirajan U, Rehman R, Ahmad T, Kumar S, Singh S, Leishangthem GD, Aich J, Kumar M, Khanna K, Singh VP, Dinda AK, Biswal S, Agrawal A, Ghosh BLinoleic acid metabolite drives severe asthma by causing airway epithelial injury.Sci Rep. 2013 Feb 27;3:1349.
  149. Govindaraj D, Gaur SN, Arora N.Characterization of Recombinant Per a 10 from Periplaneta americana.Clin Vaccine Immunol. 2013 Feb;20(2):262-8.
  150. Jalali S, Bhartiya D, Lalwani MK, Sivasubbu S, Scaria V.Systematic Transcriptome Wide Analysis of lncRNA-miRNA Interactions.PLoS ONE. 2013;8(2):e53823.
  151. Jamal S, Periwal V; Open Source Drug Discovery Consortium, Scaria V.Predictive modeling of anti-malarial molecules inhibiting apicoplast formation.BMC Bioinformatics. 2013 Feb 15;14(1):55.
  152. Rehman R, Bhat YA, Panda L, Mabalirajan U.TRPV1 inhibition attenuates IL-13 mediated asthma features in mice by reducing airway epithelial injury.Int Immunopharmacol. 2013 Mar;15(3):597-605.
  153. Issar S, Choudhary DK, Gautam HK, Gaur RK.Identification of nif genes and reconstruction of nitrogen fixing network of Pseudomonas peutida.WORLD RES J BIOTECH. 2013 Feb; 1(2); 24-28.
  154. Subramaniam S, Thakur RK, Yadav VK, Nanda R, Chowdhury S, Agrawal A.Lung cancer biomarkers: State of the art.J Carcinog. 2013 Feb 28;12:3.
  155. Kumar S, Singh BK, Prasad AK, Parmar VS, Biswal S, Ghosh B.Ethyl 3',4',5'-trimethoxythionocinnamate modulates NF-kB and Nrf2 transcription factors.Eur J Pharmacol. 2013 Jan 30;700(1-3):32-41.
  156. Kumar S, Mabalirajan U, Rehman R, Singh BK, Parmar VS, Prasad AK, Biswal S, Ghosh B.A novel cinnamate derivative attenuates asthma features and reduces bronchial epithelial injury in mouse model.Int Immunopharmacol. 2013 Jan;15(1):150-9.
  157. Jain P, Vig S, Datta M, Jindel D, Mathur AK, Mathur SK, Sharma A.Systems biology approach reveals genome to phenome correlation in type 2 diabetes.PLoS ONE. 2013;8(1):e53522.
  158. Sharma P, Gaur SN, Arora N.In silico Identification of IgE-Binding Epitopes of Osmotin Protein.PLoS ONE. 2013;8(1):e54755.
  159. Goel T, Kumar S, Maiti S.Thermodynamics and solvation dynamics of BIV TAR RNA-Tat peptide interaction.Mol Biosyst. 2013 Jan 27;9(1):88-98.
  160. Kumar KA, Lalitha A, Pavithra D, Padmavathi IJ, Ganeshan M, Rao KR, Venu L, Balakrishna N, Shanker NH, Reddy SU, Chandak GR, Sengupta S, Raghunath M.Maternal dietary folate and/or vitamin B12 restrictions alter body composition (adiposity) and lipid metabolism in Wistar rat offspring.J Nutr Biochem. 2013 Jan;24(1):25-31.
  161. Dhall P, Siddiqi TO, Ahmad A, Kumar R, Kumar A.Selection of an apt support for the immobilization of microbes for the development of a BOD biosensor.Anal Methods. 2013 Jan; 5(6): 1533-1541.
  162. Prakash Dwivedi O, Tabassum R, Chauhan G, Kaur I, Ghosh S, Marwaha RK, Tandon N, Bharadwaj D.Strong influence of variants near MC4R on adiposity in children and adults: a cross-sectional study in Indian population.J Hum Genet. 2013 Jan;58(1):27-32.
  163. Roy S, Biswas S, Saroha A, Sahu D, Das HR.Enhanced expression and fucosylation of ficolin3 in plasma of RA patients.Clin Biochem. 2013 Jan;46(1-2):160-3.
  164. Tripathi SK, Goyal R, Gupta KC, Kumar P.Functionalized graphene oxide mediated nucleic acid delivery.Carbon. 2013 Jan; 51: 224-235.
  165. Ahmad T, Aggarwal K, Pattnaik B, Mukherjee S, Sethi T, Tiwari BK, Kumar M, Micheal A, Mabalirajan U, Ghosh B, Sinha Roy S, Agrawal A.Computational classification of mitochondrial shapes reflects stress and redox state.Cell Death Dis. 2013 Jan 17;4:e461.
  166. Dhall P, Kumar R, Siddiqi TO, Ahmed A, Kumar A.Rapid monitoring and assessment of pollutional load in dairy waste water.Anal Methods. 2013 Jan; DOI: 10.1039/c2ay26269j.
  167. Beaume N, Pathak R, Yadav VK, Kota S, Misra HS, Gautam HK, Chowdhury SGenome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D-radiodurans involves G4 DNA-mediated regulationNUCLEIC ACIDS RES 2013 Jan, 41(1), 76-89.
  168. Bhatt SP, Nigam P, Misra A, Guleria R, Luthra K, Pandey RM, Pasha MA.Association of peroxisome proliferator activated receptor-? gene with non-alcoholic fatty liver disease in Asian Indians residing in north India.Gene. 2013 Jan 1;512(1):143-7.
  169. Gahoi S, Mandal RS, Ivanisenko N, Shrivastava P, Jain S, Singh AK, Varieth M, Raghunandanan MV, Kanchan S, Taneja B, Mandal C, Ivanisenko VA, Kumar A, Kumar R, Open Source Drug Discovery Consortium, Ramachandran S.Computational Screening for New Inhibitors of M. tuberculosis Mycolyltransferases Antigen 85 Group of Proteins as Potential Drug Targets.J Biomol Struct Dyn. 2013;31(1):30-43.
  170. Pintus SS, Ivanisenko NV, Demenkov PS, Ivanisenko TV, Ramachandran S, Kolchanov NA, Ivanisenko VA.The substitutions G245C and G245D in the Zn(2+)-binding pocket of the p53 protein result in differences of conformational flexibility of the DNA-binding domain.J Biomol Struct Dyn. 2013;31(1):78-86.
  171. Kaushal A, Kumar D, Khare S, Kumar A.New genetic marker for rheumatic heart disease. (Research Highlight) Nat Ind Cell Mol Biol. 2013 Jan.

Pulications List - 2012| Download PDF

  1. Agarwal T, Pradhan D, Géci I, El-Madani AM, Petersen M, Pedersen EB, Maiti S.Improved inhibition of telomerase by short twisted intercalating nucleic acids under molecular crowding conditions.Nucleic Acid Ther. 2012 Dec;22(6):399-404.
  2. Dash SK, Sharma M, Khare S, Kumar A.rmpM gene as a genetic marker for human bacterial meningitis.Cell Mol Biol. 2012 Dec 22;58(1):26-30.
  3. Kaushal A, Kumar D, Khare S, Kumar A.speB gene as a specific genetic marker for early detection of rheumatic heart disease in human.Cell Mol Biol. 2012 Dec 22;58(1):50-4.
  4. Ruhal A, Rana JS, Kumar S, Kumar A.Immobilization of malate dehydrogenase on carbon nanotubes for development of malate biosensor.Cell Mol Biol. 2012 Dec 22;58(1):15-20.
  5. Meena LS, Dhakate SR, Sahare PD.Elucidation of Mg2+ binding activity of adenylate kinase from Mycobacterium tuberculosis H37Rv using fluorescence studies.Biotechnol Appl Bioc. 2012 Dec; 59(6): 429-436.
  6. Dubey SK, Hemanth J, Venkatesh CK, Saha RN, Pasha S.New chiral reverse phase HPLC method for enantioselective analysis of ketorolac using chiral AGP column.J Pharma Anal. 2012 Dec; 2(6): 462-465.
  7. Gupta M, Jain S, Moily NS, Kaur H, Jajodia A, Purushottam M, Kukreti R.Genetic studies indicate a potential target 5-HTR(3B) for drug therapy in schizophrenia patients.Am J Med Genet B. 2012 Dec;159B(8):1006-8.
  8. Kumar A, Tikoo S, Maity S, Sengupta S, Sengupta S, Kaur A, Bachhawat AK.Mammalian proapoptotic factor ChaC1 and its homologues function as y-glutamyl cyclotransferases acting specifically on glutathione.EMBO Rep. 2012 Dec;13(12):1095-101.
  9. Bansal P, Tripathi SK, Gupta KC, Kumar P.Lipophilic and cationic triphenylphosphonium grafted linear polyethylenimine polymers for efficient gene delivery to mammalian cells.J Mat Chem. 2012 Nov; 22(48): 25427-25436.
  10. Goel A, Chhabra R, Ahmad S, Prasad AK, Parmar VS, Ghosh B, Saini N.DAMTC regulates cytoskeletal reorganization and cell motility in human lung adenocarcinoma cell line: an integrated proteomics and transcriptomics approach.Cell Death Dis. 2012 Oct 11;3:e402.
  11. Dhall P, Kumar R, Kumar A.BOD beads – a ready to use seeding material for estimation of organic load of wastewater.Anal Methods. 2012 Oct; 4: 4101-4106.
  12. Malhotra S, Balwani S, Dhawan A, Raunak, Kumar Y, Singh BK, Olsen CE, Prasad AK, Parmar VS, Ghosh B.Design, synthesis and biological activity evaluation of regioisomeric spiro-(indoline-isoxazolidines) in the inhibition of TNF-a-induced ICAM-1 expression on human endothelial cells.MedChemComm. 2012 Oct; 3, 1536-1547.
  13. Bhartiya D, Talwar J, Hasija Y, Scaria V.Systematic curation and analysis of genomic variations and their potential functional consequences in snoRNA loci.Hum Mutat. 2012 Oct;33(10):E2367-74.
  14. Bargaje R, Alam MP, Patowary A, Sarkar M, Ali T, Gupta S, Garg M, Singh M, Purkanti R, Scaria V, Sivasubbu S, Brahmachari V, Pillai B.Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain.Nucleic Acids Res. 2012 Oct;40(18):8965-78.
  15. Ali Z, Mishra A, Kumar R, Alam P, Pandey P, Ram R, Thinlas T, Mohammad G, Pasha MA.Interactions among vascular-tone modulators contribute to high altitude pulmonary edema and augmented vasoreactivity in highlanders.PLoS ONE. 2012;7(9):e44049.
  16. Abbas S, Katelaris CH, Singh AB, Raza SM, Ajab Khan M, Rashid M, Abbas M, Ismail M.World Allergy Organization Study on Aerobiology for Creating First Pollen and Mold Calendar With Clinical Significance in Islamabad, Pakistan;: A Project of World Allergy Organization and Pakistan Allergy, Asthma & Clinical Immunology Centre of Islamabad.World Allergy Organ J. 2012 Sep;5(9):103-110.
  17. Sharma A.Genome-wide expression analysis in epilepsy: a synthetic review.Curr Top Med Chem. 2012;12(9):1008-32.
  18. Parida SK, Mukerji M, Singh AK, Singh NK, Mohapatra T.SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure.BMC Genomics. 2012 Aug 25;13:426.
  19. Jalali S, Jayaraj GG, Scaria V.Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs.Biol Direct. 2012 Aug 7;7:25.
  20. Bhatt SP, Nigam P, Misra A, Guleria R, Luthra K, Jain SK, Qadar Pasha MA.Association of the Myostatin gene with obesity, abdominal obesity and low lean body mass and in non-diabetic Asian Indians in north India.PLoS ONE. 2012;7(8):e40977.
  21. Jamal S, Periwal V, Consortium O, Scaria V.Computational analysis and predictive modeling of small molecule modulators of microRNA.J Cheminform. 2012 Aug 13;4(1):16.
  22. Meena LS.Development of Antigen detection assay for Mycobacterium tuberculosis.(Book Chapter) 2012 Aug; LAP Lambert Academic Publishing; Germany.
  23. Grover S, Kukreti R.Functional Genetic Polymorphisms from Phase-II Drug Metabolizing Enzymes. (Letter to Editor)CNS Neurosci Ther. 2012 Aug;18(8):705-6.
  24. Banerjee C, Goswami R, Verma G, Datta M, Mazumder S.Aeromonas hydrophila induced head kidney macrophage apoptosis in Clarias batrachus involves the activation of calpain and is caspase-3 mediated.Dev Comp Immunol. 2012 Jul;37(3-4):323-33.
  25. Tabassum R, Jaiswal A, Chauhan G, Dwivedi OP, Ghosh S, Marwaha RK, Tandon N, Bharadwaj D.Genetic variant of AMD1 is associated with obesity in urban Indian children.PLoS ONE. 2012;7(4):e33162.
  26. Dwivedi OP, Tabassum R, Chauhan G, Ghosh S, Marwaha RK, Tandon N, Bharadwaj D.Common variants of FTO are associated with childhood obesity in a cross-sectional study of 3,126 urban Indian children.PLoS ONE. 2012;7(10):e47772.
  27. Yadav V, Sultana S, Yadav J, Saini N.Gatifloxacin induces S and G2-phase cell cycle arrest in pancreatic cancer cells via p21/p27/p53.PLoS ONE. 2012;7(10):e47796.
  28. Yadav AK, Kumar D, Dash D.Learning from decoys to improve the sensitivity and specificity of proteomics database search results.PLoS ONE. 2012;7(11):e50651.
  29. Lalwani MK, Sharma M, Singh AR, Chauhan RK, Patowary A, Singh N, Scaria V, Sivasubbu S.Reverse genetics screen in zebrafish identifies a role of miR-142a-3p in vascular development and integrity.PLoS ONE. 2012;7(12):e52588.
  30. Saw S, Kale SL, Arora N.Serine protease inhibitor attenuates ovalbumin induced inflammation in mouse model of allergic airway disease.PLoS ONE. 2012 July ;7(7):e41107.
  31. Verma G, Bhatia H, Datta M.Gene expression profiling and pathway analysis identify the integrin signaling pathway to be altered by IL-1ß in human pancreatic cancer cells: Role of JNK.Cancer Lett. 2012 Jul 1;320(1):86-95.
  32. Patowary A, Purkanti R, Singh M, Chauhan RK, Bhartiya D, Dwivedi OP, Chauhan G, Bharadwaj D, Sivasubbu S, Scaria V.Systematic analysis and functional annotation of variations in the genome of an Indian individual.Hum Mutat. 2012 Jul;33(7):1133-40.
  33. Ahmad T, Kumar M, Mabalirajan U, Pattnaik B, Aggarwal S, Singh R, Singh S, Mukerji M, Ghosh B, Agrawal A.Hypoxia Response in Asthma: Differential Modulation on Inflammation and Epithelial Injury.Am J Resp Cell Mol. 2012 Jul;47(1):1-10.
  34. Vashisht R, Mondal AK, Jain A, Shah A, Vishnoi P, Priyadarshini P, Bhattacharyya K, Rohira H, Bhat AG, Passi A, Mukherjee K, Choudhary KS, Kumar V, Arora A, Munusamy P, Subramanian A, Venkatachalam A, Gayathri S, Raj S, Chitra V, Verma K, Zaheer S, BalagaCrowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis.PLoS ONE. 2012;7(7):e39808.
  35. Goyal K, Chitransh R, Khare S, Chaudhary R, Kumar A.Rapid PCR based diagnosis of pharyngitis and rheumatic heart disease using mga gene as a specific genetic marker.J Biosci Med. 2012 July; 2(1): 1-5.
  36. Roshan R, Ghosh T, Gadgil M, Pillai B.Regulation of BACE1 by miR-29a/b in a cellular model of Spinocerebellar Ataxia 17.RNA Biol. 2012 Jun;9(6):891-9.
  37. Jaiswal A, Tabassum R, Podder A, Ghosh S, Tandon N, Bharadwaj D.Elevated level of C-reactive protein is associated with risk of prediabetes in Indians.Atherosclerosis. 2012 Jun;222(2):495-501.
  38. Bhartiya D, Kapoor S, Jalali S, Sati S, Kaushik K, Sachidanandan C, Sivasubbu S, Scaria V.Conceptual approaches for lncRNA drug discovery and future strategies.Expert Opin on Drug Disc. 2012 Jun;7(6):503-13.
  39. Sadhukhan T, Vishal M, Das G, Sharma A, Mukhopadhyay A, Das SK, Ray K, Ray J.Evaluation of the role of LRRK2 gene in Parkinson's disease in an East Indian cohort.Dis Markers. 2012;32(6):355-62.
  40. Mahato M, Arora V, Pathak R, Gautam HK, Sharma AK.Fabrication of nanostructures through molecular self-assembly of small amphiphilic glyco-dehydropeptides.Mol Biosyst. 2012 Jun;8(6):1742-9.
  41. Tripathi SK, Goyal R, Kashyap MP, Pant AB, Haq W, Kumar P, Gupta KC.Depolymerized chitosans functionalized with bPEI as carriers of nucleic acids and tuftsin-tethered conjugate for macrophage targeting.Biomaterials. 2012 Jun;33(16):4204-19.
  42. Grover S, Gourie-Devi M, Bala K, Sharma S, Kukreti R.Genetic association analysis of transporters identifies ABCC2 loci for seizure control in women with epilepsy on first-line antiepileptic drugs.Pharmacogenet Genom. 2012 Jun;22(6):447-65.
  43. Mahato M, Rana G, Kumar P, Sharma AK.Tetramethylguanidinium-polyallylamine (Tmg-PA): A new class of nonviral vector for efficient gene transfection.J Polym Sci Pol Chem. 2012 Jun; 50(12): 2344-2355.
  44. Rahul A, Rana JS, Kumar S, Kumar A.Functionalization and Fabrication of MWCNT on Screen Printed Carbon Eletrode.Int J Mod Eng Res. 2012 Jun; 2(3): 1310-1313.
  45. Kumar A, Dash SK, Dharma DP and Suman.DNA Based Biosensors for Detection of Pathogens.(Book Chapter). Molecular approaches for Plant Fungal Disease Management, Ed. HP Singh, P. Chowdappa, BN Chakraborty, AP Podile, Westville Publishing House.
  46. Patel SKS, Kalia VC.Integrative Biological Hydrogen Production: An Overview (Review Aritcle)Ind J Microbiol. 2012 Jun; DOI 10.1007/s12088-012-0287-6.
  47. Kumar S, Reddy L CS, Kumar Y, Kumar A, Singh BK, Kumar V, Malhotra S, Pandey MK, Jain R, Thimmulappa R, Sharma SK, Prasad AK, Biswal S, Van der Eycken E, Depass AL, Malhotra SV, Ghosh B, Parmar VS.Arylalkyl Ketones, Benzophenones, Desoxybenzoins and Chalcones Inhibit TNF-alpha Induced Expression of ICAM-1: Structure-Activity Analysis.Arch Pharm (Weinheim). 2012 May;345(5):368-77.
  48. Verma G, Datta M.The critical role of JNK in the ER-mitochondrial crosstalk during apoptotic cell death.J Cell Physiol. 2012 May;227(5):1791-5.
  49. Baral A, Kumar P, Halder R, Mani P, Yadav VK, Singh A, Das SK, Chowdhury S.Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals.Nucleic Acids Res. 2012 May;40(9):3800-11.
  50. Umamaheswaran G, Krishna Kumar D, Kayathiri D, Rajan S, Shewade DG, Dkhar SA, Manjunath S, Ushakiran P, Reneega G, Ritushree K, Adithan C.Inter and intra-ethnic differences in the distribution of the molecular variants of TPMT, UGT1A1 and MDR1 genes in the South Indian population.Mol Biol Rep. 2012 May;39(5):6343-51.
  51. Patil KM, Naik RJ, Rajpal, Fernandes M, Ganguli M, Kumar VA.Highly efficient (R-X-R)-type carbamates as molecular transporters for cellular delivery.J Am Chem Soc. 2012 May 2;134(17):7196-9.
  52. Beck T, Gollapudi S, Brunak S, Graf N, Lemke HU, Dash D, Buchan I, Díaz C, Sanz F, Brookes AJ.Knowledge engineering for health: a new discipline required to bridge the "ICT gap" between research and healthcare.Hum Genet. 2012 May;33(5):797-802.
  53. Reena, Majhi MC, Arya AK, Kumar R and Kumar A.BioRadBase: A database for bioremediation of radioactive waste.Afr J Biotech. 2012 May; 11(35): 8718-8721.
  54. Sharma R, Gaur SN, Singh VP, Singh AB.Association between indoor fungi in Delhi homes and sensitization in children with respiratory allergy.Med Mycol. 2012 Apr;50(3):281-90.
  55. Sharma A.Genome-Wide Expression Analysis of Valproate Action: A Systems Level Synthesis.Curr Psychopharmacol. 2012 Apr; 1(4): 315-326.
  56. Nasir SA, Sharma A, Khanam R and Vohora D.Effect of medroxyprogesterone on development of pentylenetetrazole-induced kindling in mice.Neuroscience. 2012 Apr 5;207:283-7.
  57. Krishnakumar D, Gurusamy U, Dhandapani K, Surendiran A, Baghel R, Kukreti R, Gangadhar R, Prayaga U, Manjunath S, Adithan C.Genetic polymorphisms of drug-metabolizing phase I enzymes CYP2E1, CYP2A6 and CYP3A5 in South Indian population.Fund Clin Pharmacol. 2012 Apr;26(2):295-306.
  58. Grover S, Kukreti R.Research Highlights: Genetic polymorphisms and retention rate of antiepileptic drugs.Pharmacogenomics. 2012 Apr;13(5):519-24.
  59. Tripathi SK, Yadav S, Gupta KC, Kumar P.Synthesis and evaluation of N-(2,3-dihydroxypropyl)-PEIs as efficient vectors for nucleic acids.Mol Biosyst. 2012 Apr 3;8(5):1426-34.
  60. Tripathi SK, Goyal R, Kumar P, Gupta KC.Linear polyethylenimine-graft-chitosan copolymers as efficient DNA/siRNA delivery vectors in vitro and in vivo.Nanomedicine. 2012 Apr;8(3):337-45.
  61. Chhabra A, Haque AS, Pal RK, Goyal A, Rai R, Joshi S, Panjikar S, Pasha S, Sankaranarayanan R, Gokhale RS.Nonprocessive [2 + 2]e- off-loading reductase domains from mycobacterial nonribosomal peptide synthetases.P Natl Acad Sci USA. 2012 Apr 10;109(15):5681-6.
  62. Qadar Pasha MA and Pandey P.Oxygen Sensing Pathway:Revealing and Documentibg Human Adaptation to Hypobaric Hypoxia of High-Altitude.(Book Chapter) Perspectives in Cytology and Genetics (Proceedings of the fifteenth All India Congress of Cytology and Genetics, India). 15:113-122.
  63. Johari S, Sinha S, Bora S, Biswas S, Gupta K.Ligand Binding Studies of Caspase 3 Protein with Compounds of Bacopa monneri - A Target Protein Responsible for Alzheimer’s Disease (AD).(Book Chapter) 2012 Apr; Global Trends in Computing and Communication Systems: 269, 37-43.
  64. Dash S, Sharma M, Kumar A.Meningitis-Diagnostic techniques and treatment of meningitis, Meningitis: Causes, Diagnosis and Treatment,.(Book Chapter) 2012 Apr; (Editors: Grigoris Houllis and Magdalini Karachalios) Published by Nova Science Publishers, New York, USA.
  65. Sharma M, Yadav S, Dash SK, Meenu, Kumar A.Nanotechnology in enzyme sensors: A Review.(Book Chapter) 2012 Apr; Proc Nat Sem on Challenges in Combating Diseases: Cause to Cure, pp.261-266, Published by Department of Zoology, M. D. University, Rohtak, Haryana.
  66. Gupta AK, Ghosh B, Agrawal A.Inherited Factors in Obstructive Lung Diseases in India.(Book Chapter). 2012 Genomics and Health in the Developing World, Oxford press, ed D Kumar.
  67. Sharma A.Ed: Hot Topic: Genome-Wide Analysis of Drug ActionCurr Psychopharmacol. 2012 1(4):271.
  68. Kar A, Saha D, Purohit G, Singh A, Kumar P, Yadav VK, Kumar P, Thakur RK, Chowdhury S.Metastases suppressor NME2 associates with telomere ends and telomerase and reduces telomerase activity within cells.Nucleic Acids Res. 2012 Mar;40(6):2554-65.
  69. Tabassum R, Mahendran Y, Dwivedi OP, Chauhan G, Ghosh S, Marwaha RK, Tandon N, Bharadwaj D.Common Variants of IL6, LEPR, and PBEF1 Are Associated With Obesity in Indian Children.Diabetes. 2012 Mar;61(3):626-31.
  70. Tabassum R, Mahajan A, Dwivedi OP, Chauhan G, Spurgeon CJ, Kumar MV, Ghosh S, Madhu SV, Mathur SK, Chandak GR, Tandon N, Bharadwaj D.Common variants of SLAMF1 and ITLN1 on 1q21 are associated with type 2 diabetes in Indian population.J Hum Genet. 2012 Mar;57(3):184-90.
  71. Basu K, Sen A, Ray K, Ghosh I, Datta K, Mukhopadhyay A.Genetic association and gene-gene interaction of HAS2, HABP1 and HYAL3 implicate hyaluronan metabolic genes in glaucomatous neurodegeneration.Dis Markers. 2012;33(3):145-54.
  72. Upadhyay SK, Gautam P, Pandit H, Singh Y, Basir SF, Madan T.Identification of Fibrinogen-Binding Proteins of Aspergillus fumigatus Using Proteomic Approach.Mycopathologia. 2012 Mar;173(2-3):73-82.
  73. Kandoi G, Nanda, A, Scaria V, Sivasubbu S.A Case for Pharmacogenomics in Management of Cardiac Arrhythmias.Indian Pacing Electrophysiol J. 2012 Mar;12(2):54-64.
  74. Periwal V, Kishtapuram S; Open Source Drug Discovery Consortium, Scaria V.Computational models for in-vitro anti-tubercular activity of molecules based on high-throughput chemical biology screening datasets.BMC Pharmacol. 2012 Mar 31;12:1.
  75. Garg G, Kumar J, Tanwar VS, Basak T, Seth S, Karthikeyan G, Sengupta S.Polymorphisms in transcobalamin II gene is associated with coronary artery disease in Indian population.Biomarkers. 2012 Mar;17(2):119-24.
  76. Suryawanshi H, Lalwani MK, Ramasamy S, Rana R, Scaria V, Sivasubbu S, Maiti S.Antagonism of microRNA function in zebrafish embryos by using locked nucleic acid enzymes (LNAzymes).Chembiochem. 2012 Mar 5;13(4):584-9.
  77. Patra MC, Kumar K, Pasha S, Chopra M.Comparative modeling of human kappa opioid receptor and docking analysis with the peptide YFa.J Mol Graph Model. 2012 Mar;33:44-51.
  78. Mishra A, Ali Z, Vibhuti A, Kumar R, Alam P, Ram R, Thinlas T, Mohammad G, Pasha MAQ.CYBA and GSTP1 variants associate with oxidative stress under hypobaric hypoxia as observed in high-altitude pulmonary edema.Clin Sci. 2012 Mar;122(6):299-309.
  79. Gupta S, Singh S, Kathuria A, Kumar M, Sharma S, Kumar R, Parmar VS, Singh B, Gupta A, Eycken EVD, Sharma GL, Sharma SK.Ammonium derivatives of chromenones and quinolinones as lead antimicrobial agents.J Chem Sci. 2012 Mar; 124(2): 437-449.
  80. Patnaik S, Dash SK, Sethi D, Kumar A, Gupta KC, Kumar P.Engineered polymer-supported synthesis of 3'-carboxyalkyl-modified oligonucleotides and their applications in the construction of biochips for diagnosis of the diseases.Bioconjugate Chem. 2012 Mar 21;23(3):664-70.
  81. Singh R, Saini N.Downregulation of BCL2 by miRNAs augments drug induced apoptosis: Combined computational and experimental approach.J Cell Sci. 2012 Mar 15;125(Pt 6):1568-78.
  82. Singhal J, Agrawal N, Vashishta M, Priya NG, Tiwari BK, Singh Y, Raman R, Natarajan K.Suppression of dendritic cell mediated responses by genes in the calcium and cysteine protease pathways during Mycobacterium tuberculosis infection.J Biol Chem. 2012 Mar 30;287(14):11108-21.
  83. Ahluwalia JK, Soni K, Sivasubbu S, Brahmachari V.Modeling SNP mediated differential targeting of homologous 3'UTR by MicroRNA.RNA Biol. 2012 Mar 1;9(3).
  84. Gupta AC, Misra R, Sakhuja P, Singh Y, Basir SF, Sarin SK.Association of adiponectin gene functional polymorphisms (-11377C/G and +45T/G) with nonalcoholic fatty liver disease.Gene. 2012 Mar 15;496(1):63-7.
  85. Gupta M, Kukreti R.Genomics and Drug Research.(Book Chapter). Principles of Clinical Research, for Nirali Publications
  86. Agrawal A.Living in a Bayesian world: scientific deduction through induction. (Commentary)Curr Sci India. 2012 Mar; 102(5): 676-677.
  87. Agrawal A, Sharma A.Likelihood of false-positive results in high-impact journals publishing groundbreaking research. (Authors Reply)Infect Immun. 2012 Mar;80(3):1300.
  88. Kumar R, Nejatizadeh A, Gupta M, Markan A, Tyagi S, Jain SK, Pasha MAQ.The epistasis between vascular homeostasis genes is apparent in essential hypertension.Atherosclerosis. 2012 Feb;220(2):418-24.
  89. Nahar P, Bora U, Sharma GL, Kannoujia DK.Microwave-mediated enzyme-linked immunosorbent assay procedure.Anal Biochem. 2012 Feb 15;421(2):764-6.
  90. Salvi S, Agrawal A.India Needs a National COPD Prevention and Control Programme.J Asso Phys Ind. 2012 Feb; 60: 5-7.
  91. Goyal A, Verma P, Anandhakrishnan M, Gokhale RS, Sankaranarayanan R.Molecular Basis of the Functional Divergence of Fatty Acyl-AMP Ligase Biosynthetic Enzymes of Mycobacterium tuberculosis.J Mol Biol. 2012 Feb 17;416(2):221-38.
  92. Sinha A, Krishnan V, Sethi T, Roy S, Ghosh B, Lodha R, Kabra S, Agrawal A.Metabolomic signatures in NMR Spectra of Exhaled Breath Condensate identify asthma.Eur Respir J. 2012 Feb;39(2):500-502.
  93. Patnaik S, Goyal , Tripathi SK, Arif M, Gupta KC.Engineered PEI-piperazinyl nanoparticles as efficient gene delivery vectors: evidence from both in vitro and in vivo studies.RSC Advances. 2012 Feb; 2: 4335-4342.
  94. Goyal R, Tripathi SK, Tyagi S, Sharma A, Ram KR, Chowdhuri DK, Shukla Y, Kumar P, Gupta KC.Linear PEI nanoparticles: efficient pDNA/siRNA carriers in vitro and in vivo.Nanomedicine. 2012 Feb;8(2):167-75.
  95. Adkar BV, Tripathi A, Sahoo A, Bajaj K, Goswami D, Chakrabarti P, Swarnkar MK, Gokhale RS, Varadarajan R.Protein model discrimination using mutational sensitivity derived from deep sequencing.Structure. 2012 Feb 8;20(2):371-81.
  96. Sati S, Tanwar VS, Kumar KA, Patowary A, Jain V, Ghosh S, Ahmad S, Singh M, Reddy SU, Chandak GR, Raghunath M, Sivasubbu S, Chakraborty K, Scaria V, Sengupta S.High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region.PLoS ONE. 2012;7(2):e31621.
  97. Jha P, Sinha S, Kanchan K, Qidwai T, Narang A, Singh PK, Pati SS, Mohanty S, Mishra SK, Sharma SK, Awasthi S, Venkatesh V, Jain S, Basu A, Xu S; Indian Genome Variation Consortium, Mukerji M, Habib S.Deletion of the APOBEC3B gene strongly impacts susceptibility to falciparum malaria.Infect Genet Evol. 2012 Jan;12(1):142-8.
  98. Bandyopadhyay A, Saxena K, Kasturia N, Dalal V, Bhatt N, Rajkumar A, Maity S, Sengupta S, Chakraborty K.Chemical chaperones assist intracellular folding to buffer mutational variations.Nat Chem Biol. 2012 Jan 15;8(3):238-45.
  99. Bose D, Jayaraj G, Suryawanshi H, Agarwala P, Pore SK, Banerjee R, Maiti S.The Tuberculosis Drug Streptomycin as a Potential Cancer Therapeutic: Inhibition of miR-21 Function by Directly Targeting Its Precursor.Angew Chem Int Ed . 2012 Jan 23;51(4):1019-23.
  100. Gautam P, Jha P, Kumar D, Tyagi S, Varma B, Dash D, Mukhopadhyay A, Indian Genome Variation Consortium, Mukerji M.Spectrum of large copy number variations in 26 diverse Indian populations: potential involvement in phenotypic diversity.Hum Genet. 2012 Jan;131(1):131-43.
  101. Mahajan A, Jaiswal A, Tabassum R, Podder A, Ghosh S, Madhu SV, Mathur SK, Tandon N, Bharadwaj D.Elevated levels of C-reactive protein as a risk factor for Metabolic Syndrome in Indians.Atherosclerosis. 2012 Jan;220(1):275-81.
  102. Anurag M, Singh GP, Dash D.Location of disorder in coiled coil proteins is influenced by its biological role and subcellular localization: a GO-based study on human proteome.Mol Biosyst. 2012 Jan;8(1):346-52.
  103. Chauhan G, Kaur I, Tabassum R, Dwivedi OP, Ghosh S, Tandon N, Bharadwaj D.Common variants of homocysteine metabolism pathway genes and risk of type 2 diabetes and related traits in indians.Exp Diabetes Res. 2012;2012:960318.
  104. Patowary A, Chauhan RK, Singh M, Kv S, Periwal V, Kp K, Sapkal GN, Bondre VP, Gore MM, Sivasubbu S, Scaria V.De novo identification of viral pathogens from cell culture hologenomes.BMC Res Notes. 2012 Jan 6;5:11.
  105. Verma N, Chakrabarti R, Das RH, Gautam HK.Anti-Inflammatory Effects of Shea Butter through Inhibition of Inos, Cox-2, and Cytokines via the Nf-Kb Pathway in Lps-Activated J774 Macrophage Cells.J Complement Integr Med. 2012 Jan 12;9(1).
  106. Sahu D, Saroha A, Roy S, Das S, Srivastava PS, Das HR.Suramin ameliorates collagen induced arthritis.Int Immunopharmacol. 2012 Jan;12(1):288-93.
  107. Goyal R, Tripathi SK, Vazquez E, Kumar P, Gupta KC.Biodegradable Poly(vinyl alcohol)-polyethylenimine Nanocomposites for Enhanced Gene Expression In Vitro and In Vivo.Biomacromolecules. 2012 Jan 9;13(1):73-83.
  108. Jayaraj GG, Pandey S, Scaria V, Maiti S.Potential G-quadruplexes in the human long non-coding transcriptome.RNA Biol. 2012 Jan;9(1):81-6.
  109. Ponnudurai RP, Basak T, Ahmad S, Bhardwaj G, Chauhan RK, Singh RA, Lalwani MK, Sivasubbu S, Sengupta S.Proteomic analysis of zebrafish (Danio rerio) embryos exposed to cyclosporine A.J Proteomics. 2012 Jan 4;75(3):1004-17.
  110. Vig S, Pandey AK, Verma G, Datta M.C/EBPalpha mediates the transcriptional suppression of human calreticulin gene expression by TNFalpha.Int J Biochem Cell B. 2012 Jan;44(1):113-22.
  111. Rajpal, Mann A, Khanduri R, Naik RJ, Ganguli M.Structural rearrangements and chemical modifications in known cell penetrating peptide strongly enhance DNA delivery efficiency.J Control Release. 2012 Jan 30;157(2):260-71.
  112. Singh A, Sharma P, Kar HK, Sharma VK, Tembhre MK, Gupta S, Laddha NC, Dwivedi M, Begum R, The Indian Genome Variation Consortium, Gokhale RS, Rani R.HLA Alleles and Amino-Acid Signatures of the Peptide-Binding Pockets of HLA Molecules in Vitiligo.J Invest Dermatol. 2012 Jan;132(1):124-34.
  113. Nair DR, Swadha A, Verma P, Gokhale RS.Genetic, biosynthetic and functional versatility of polyketide synthases.Curr Sci India. 2012 Jan; 102(2): 277-287.
  114. Gautam HK, Gupta VK, Gaur RK.Bacterial Biochemistry and Biotechnology (Microbiology) 2012.(Ed. Book). Lambert academic Publishing, Germany, Jan, 2012.
  115. Jha A, Pathak R, Gautam HK.Microbiome: Current understanding and future perspectives.(Book Chapter). R.K. Gaur, Vijai Kumar Gupta and H.K. Gautam (Eds), "Bacterial Biochemistry and Biotechnology" by LAP Lambert Academic Publishing AG &Co. KG, Dudweller Landstr, Germany, Jan, 2012
  116. Mabalirajan U, Agrawal A, Ghosh B.15-Lipoxygenase eicosanoids are the putative ligands for vanilloid receptors and peroxisome proliferator-activated receptors (PPARs). (Letters and Correspondence)P Natl Acad Sci USA. 2012 Jan 3;109(1):E1.

Pulications List - 2011| Download PDF

  1. Dubey R, Chhabra R, Saini N.Small interfering RNA against transcription factor STAT6 leads to increased cholesterol synthesis in lung cancer cell lines.PLoS ONE. 2011;6(12):e28509.
  2. Sharma V, Singh BP, Arora N.Cur l 3, a major allergen of Curvularia lunata-derived short synthetic peptides, shows promise for successful immunotherapy.Am J Resp Cell Mol. 2011 Dec;45(6):1178-84.
  3. Sharma V, Singh BP, Arora N.Cur l 3, a Major Allergen of Curvularia Lunata Derived Short Synthetic Peptides Show Promise for Successful Immunotherapy.Am J Resp Cell Mol. 2011 Dec;45(6):1178-84.
  4. Gupta M, Kaur H, Jajodia A, Jain S, Satyamoorthy K, Mukerji M, Thirthalli J; Indian Genome Variation Consortium, Kukreti R.Diverse Facets of COMT: From a Plausible Predictive Marker to a Potential Drug Target for Schizophrenia.Curr Mol Med. 2011 Dec;11(9):732-43.
  5. Kelkar DS, Kumar D, Kumar P, Balakrishnan L, Muthusamy B, Yadav AK, Shrivastava P, Marimuthu A, Anand S, Sundaram H, Kingsbury R, Harsha HC, Nair B, Keshava Prasad TS, Chauhan DS, Katoch K, Katoch VM, Kumar P, Chaerkady R, Ramachandran S, Dash D, Pandey AProteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.Mol Cell Proteomics. 2011 Dec;10(12):M111.011627.
  6. Sharma S, Sahu D, Das HR, Sharma D.Amelioration of collagen-induced arthritis by Salix nigra bark extract via suppression of pro-inflammatory cytokines and oxidative stress.Food Chem Toxicol. 2011 Dec;49(12):3395-406.
  7. Yadav S, Kumar A, Pundir CS.Amperometric creatinine biosensor based on covalently coimmobilized enzymes onto carboxylated multiwalled carbon nanotubes/polyaniline composite film.Anal Biochem. 2011 Dec 15;419(2):277-83.
  8. Kaur K, Pandey AK, Srivastava S, Srivastava AK, Datta M.Comprehensive miRNome and in silico analyses identify the Wnt signaling pathway to be altered in the diabetic liver.Mol Biosyst. 2011 Dec;7(12):3234-44.
  9. Rai AK, Thakur CP, Velpandian T, Sharma SK, Ghosh B, Mitra DK.High concentration of adenosine in human visceral leishmaniasis despite increased ADA and decreased CD73.Parasite Immunol. 2011 Nov;33(11):632-6.
  10. Pandey R, Mandal AK, Jha V, Mukerji M.Heat shock factor binding in Alu repeats expands its involvement in stress through an antisense mechanism.Genome Biol. 2011 Nov 23;12(11):R117.
  11. Gautam P, Upadhyay SK, Hassan W, Madan T, Sirdeshmukh R, Sundaram CS, Gade WN, Basir SF, Singh Y, Sarma PU.Transcriptomic and proteomic profile of Aspergillus fumigatus on exposure to artemisinin.Mycopathologia. 2011 Nov;172(5):331-46.
  12. Kasera R, Singh BP, Lavasa S, Prasad KN, Sahoo RC, Singh AB.Kidney Bean: A Major Sensitizer among Legumes in Asthma and Rhinitis Patients from India.PLoS ONE. 2011 Nov;6(11):e27193.
  13. Kumar M, Ahmad T, Sharma A, Mabalirajan U, Kulshreshtha A, Agrawal A, Ghosh B.Let-7 microRNA-mediated regulation of IL-13 and allergic airway inflammation.J Allergy Clin Immun. 2011 Nov;128(5):1077-1085.
  14. Kumar S, Singh BK, Arya P, Malhotra S, Thimmulappa R, Prasad AK, Van der Eycken E, Olsen CE, Depass AL, Biswal S, Parmar VS, Ghosh B.Novel natural product-based cinnamates and their thio and thiono analogs as potent inhibitors of cell adhesion molecules on human endothelial cells.Eur J Med Chem. 2011 Nov;46(11):5498-511.
  15. Tripathi SK, Goyal R, Ansari KM, Ravi Ram K, Shukla Y, Chowdhuri DK, Gupta KC.Polyglutamic acid-based nanocomposites as efficient non-viral gene carriers in vitro and in vivo.Eur J Pharm Biopharm. 2011 Nov;79(3):473-84.
  16. Saini R, Kapoor R, Kumar R, Siddiqi TO, Kumar A.CO2 utilizing microbes--a comprehensive review.Biotechnol Adv. 2011 Nov-Dec;29(6):949-60.
  17. Rani A, Jain S, Dureja P, Kumar R, Kumar A.Synthesis of some 3-(5-chloro-1,3-diaryl-1H-pyrazol-4-yl)-1-arylprop-2-en-1-ones and 1,5-bis(5-chloro-1,3-diaryl-1H-pyrazol-4-yl)pent-1,4-diene-3-ones and their antimicrobial activity.Indian J Chem. B. 2011 Oct; 50B: 1524-1531
  18. Kumar K, Goyal R, Mudgal A, Mohan A, Pasha S.YFa and analogs: investigation of opioid receptors in smooth muscle contraction.World J Gastroenterol. 2011 Oct 28;17(40):4523-31.
  19. Anand P, Sankaran S, Mukherjee S, Yeturu K, Laskowski R, Bhardwaj A, Bhagavat R; OSDD Consortium, Brahmachari SK, Chandra N.Structural annotation of Mycobacterium tuberculosis proteome.PLoS ONE. 2011;6(10):e27044.
  20. Tripathi SK, Goyal R, Gupta KC.Surface modification of crosslinked dextran nanoparticles influences transfection efficiency of dextran–polyethylenimine nanocomposites.Soft Matter. 2011 Oct ,7, 11360-11371
  21. NejatizadehI A, Kumar R, Stobdanand T, Pasha MAQ.Association of GNB3 C825T polymorphism with plasma electrolyte balance and susceptibility to hypertension.Genet Mol Biol. 2011 Oct; 34(4):553-556.
  22. Thakur RK, Yadav VK, Kumar P, Chowdhury S.Mechanisms of non-metastatic 2 (NME2)-mediated control of metastasis across tumor types.N-S Arch Pharmacol. 2011 Oct;384(4-5):397-406.
  23. Yadav S, Devi R, Kumar A, Pundir CS.Tri-enzyme functionalized ZnO-NPs/CHIT/c-MWCNT/PANI composite film for amperometric determination of creatinine.Biosens Bioelectron. 2011 Oct 15;28(1):64-70.
  24. Gupta HK, Singh A, Sharma R.Genome sequence of Idiomarina sp. strain A28L, isolated from Pangong Lake, India.J Bacteriol. 2011 Oct;193(20):5875-6.
  25. Sajid A, Arora G, Gupta M, Singhal A, Chakraborty K, Nandicoori VK, Singh Y.Interaction of Mycobacterium tuberculosis elongation factor Tu with GTP is regulated by phosphorylation.J Bacteriol. 2011 Oct;193(19):5347-58.
  26. Gupta HK, Gupta RD, Singh A, Chauhan NS, Sharma R.Genome sequence of Rheinheimera sp. strain A13L, isolated from Pangong Lake, India.J Bacteriol. 2011 Oct;193(20):5873-4.
  27. Sharma P, Kannoujia DK, Basir SF, Nahar P.Rapid immobilization of enzymes onto solid supports by ultrasound waves.Artif Cell Blood Sub. 2011 Oct;39(5):289-92.
  28. Chavali S, Mahajan A, Tabassum R, Dwivedi OP, Chauhan G, Ghosh S, Tandon N, Bharadwaj D.Association of variants in genes involved in pancreatic ?-cell development and function with type 2 diabetes in North Indians.J Hum Genet. 2011 Oct;56(10):695-700.
  29. Huma N, Shankar P, Kushwah J, Bhushan A, Joshi J, Mukherjee T, Raju S, Purohit H, Kalia VC.Diversity and Polymorphism in AHL-Lactonase Gene (aiiA) of Bacillus.J Microbiol Biotechn. 2011 Oct;21(10):1001-11.
  30. Kumar P, Yadav VK, Baral A, Kumar P, Saha D, Chowdhury S.Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide.Nucleic Acids Res. 2011 Oct;39(18):8005-16.
  31. Mehla K, Balwani S, Kulshreshtha A, Nandi D, Jaisankar P, Ghosh B.Ethyl gallate isolated from Pistacia integerrima Linn. inhibits cell adhesion molecules by blocking AP-1 transcription factor.J Ethnopharmacol. 2011 Oct 11;137(3):1345-52.
  32. Agarwal T, Kumar S, Maiti S.Unlocking G-quadruplex: Effect of unlocked nucleic acid on G-quadruplex stability.Biochimie. 2011 Oct;93(10):1694-700.
  33. Chauhan G, Tabassum R, Mahajan A, Dwivedi OP, Mahendran Y, Kaur I, Nigam S, Dubey H, Varma B, Madhu SV, Mathur SK, Ghosh S, Tandon N, Bharadwaj D.Common variants of FTO and the risk of obesity and type 2 diabetes in Indians.J Hum Genet. 2011 Oct;56(10):720-6.
  34. Mann A, Thakur G, Shukla V, Singh AK, Khanduri R, Naik R, Jiang Y, Kalra N, Dwarakanath BS, Langel U, Ganguli M.Differences in DNA condensation and release by lysine and arginine homopeptides govern their DNA delivery efficiencies.Mol Pharmaceut. 2011 Oct 3;8(5):1729-41.
  35. Nair DR, Ghosh R, Manocha A, Mohanty D, Saran S, Gokhale RS.Two Functionally Distinctive Phosphopantetheinyl Transferases from Amoeba Dictyostelium discoideum.PLoS ONE. 2011 Sep;6(9):e24262.
  36. Pandey R, Mukerji M.From 'JUNK' to just unexplored noncoding knowledge: the case of transcribed Alus.Brief Funct Genomics. 2011 Sep;10(5):294-311.
  37. Kumar N, Taneja KK, Kalra V, Behari M, Aneja S, Bansal SK.Genomic profiling identifies novel mutations and SNPs in ABCD1 gene: a molecular, biochemical and clinical analysis of X-ALD cases in India.PLoS ONE. 2011 Sep;6(9):e25094.
  38. Ding Y, Sun X, Huang W, Hoage T, Redfield M, Kushwaha S, Sivasubbu S, Lin X, Ekker S, Xu X.Haploinsufficiency of target of rapamycin attenuates cardiomyopathies in adult zebrafish.Cric Res. 2011 Sep 2;109(6):658-69.
  39. Bhardwaj A, Scaria V, Raghava GP, Lynn AM, Chandra N, Banerjee S, Raghunandanan MV, Pandey V, Taneja B, Yadav J, Dash D, Bhattacharya J, Misra A, Kumar A, Ramachandran S, Thomas Z; Open Source Drug Discovery Consortium, Brahmachari SK.Open source drug discovery- A new paradigm of collaborative research in tuberculosis drug development.Tuberculosis. 2011 Sep;91(5):479-86.
  40. Chavali S, Mahajan A, Ghosh S, Mondal B, Bharadwaj D.Protein molecular function influences mutation rates in human genetic diseases with allelic heterogeneity.Biochem Bioph Res Co. 2011 Sep 9;412(4):716-22.
  41. Chakraborti PK, Matange N, Nandicoori VK, Singh Y, Tyagi JS, Visweswariah SS.Signalling mechanisms in Mycobacteria.Tuberculosis. 2011 Sep;91(5):432-40.
  42. Goyal R, Tripathi SK, Tyagi S, Ravi Ram K, Ansari KM, Shukla Y, Kar Chowdhuri D, Kumar P, Gupta KC.Gellan gum blended PEI nanocomposites as gene delivery agents: evidences from in vitro and in vivo studies.Eur J Pharm Biopharm. 2011 Sep;79(1):3-14.
  43. Sethi TP, Prasher B, Mukerji M.Ayurgenomics: a new way of threading molecular variability for stratified medicine.ACS Chem Biol. 2011 Sep 16;6(9):875-80.
  44. Kesavan R, Kukreti R, Adithan C.Genetic polymorphism of drug refractory epilepsy.Indian J Med Res. 2011 Sep;134(3):253-5.
  45. Kumar R, Wani SI, Chauhan NS, Sharma R, Sareen D.Cloning and characterization of an epoxide hydrolase from Cupriavidus metallidurans-CH34.Protein Expres Purif. 2011 Sep;79(1):49-59.
  46. Kumar M, Bhadoria DP, Dutta K, Singh S, Gupta J, Kumar R, Chhillar AK, Yadav V, Singh B, Sharma GL.Combinatorial effect of TIMP-1 and a1AT gene polymorphisms on development of chronic obstructive pulmonary disease.Clin Biochem. 2011 Sep;44(13):1067-73.
  47. Saha A, Nayak S, Mani KR, Chandak GR; INDIAN GENOME VARIATION CONSORTIUM, Ray K, Mukhopadhyay A.A set of five microsatellite markers linked to F8 gene can detect haemophilia A carriers across India.Haemophilia. 2011 Sep;17(5):e928-35.
  48. Yadav AK, Bhardwaj G, Basak T, Kumar D, Ahmad S, Priyadarshini R, Singh AK, Dash D, Sengupta S.A systematic analysis of eluted fraction of plasma post immunoaffinity depletion: implications in biomarker discovery.PLoS ONE. 2011 Sep;6(9):e24442.
  49. Sharma P, Singh AK, Singh BP, Gaur SN, Arora N.Allergenicity assessment of osmotin, a pathogenesis-related protein, used for transgenic crops.J Agr Food Chem. 2011 Sep 28;59(18):9990-5.
  50. Mahajan A, Tabassum R, Chavali S, Dwivedi OP, Chauhan G, Ghosh S, Tandon N, Bharadwaj D.Common variants in CRP and LEPR influence high sensitivity C-reactive protein levels in North Indians.PLoS ONE. 2011 Sep;6(9):e24645.
  51. Mohanty D, Sankaranarayanan R, Gokhale RS.Fatty acyl-AMP ligases and polyketide synthases are unique enzymes of lipid biosynthetic machinery in Mycobacterium tuberculosis.Tuberculosis. 2011 Sep;91(5):448-55.
  52. Sharma A.Immune response also connects autism and epilepsy.Nat Methods. 2011 Aug 4;17(8):922.
  53. Goel G, Pal PK, Ravishankar S, Venkatasubramanian G, Jayakumar PN, Krishna N, Purushottam M, Saini J, Faruq M, Mukerji M, Jain S.Gray matter volume deficits in spinocerebellar ataxia: an optimized voxel based morphometric study.Parkinsonism Relat D. 2011 Aug;17(7):521-7.
  54. Tabassum R, Mahajan A, Chauhan G, Dwivedi OP, Dubey H, Sharma V, Kundu B, Ghosh S, Tandon N, Bharadwaj D.No association of TNFRSF1B variants with type 2 diabetes in Indians of Indo-European origin.BMC Med Genet. 2011 Aug 17;12:110.
  55. Srivastava D, Gaur SN, Arora N, Singh BP.Clinico-immunological changes post-immunotherapy with Periplaneta americana.Eur J Clin Invest. 2011 Aug;41(8):879-88.
  56. Bhattacharyya J, Maiti S, Muhuri S, Nakano S, Miyoshi D, Sugimoto N.Effect of locked nucleic acid modifications on the thermal stability of noncanonical DNA structure.Biochemistry. 2011 Aug 30;50(34):7414-25.
  57. Dhaker AS, Marwah R, Damodar R, Gupta D, Gautam HK, Sultana S, Arora R.In vitro evaluation of antioxidant and radioprotective properties of a novel extremophile from mud volcano: implications for management of radiation emergencies.Mol Cell Biochem. 2011 Jul;353(1-2):243-50.
  58. Chhabra R, Dubey R, Saini N.Gene expression profiling indicate role of ER stress in miR-23a~27a~24-2 cluster induced apoptosis in HEK293T cells.RNA Biol. 2011 Jul 1;8(4):648-64.
  59. Narang A, Jha P, Rawat V, Mukhopadhyay A, Dash D; Indian Genome Variation Consortium, Basu A, Mukerji M.Recent admixture in an Indian population of African ancestry.Am J Hum Genet. 2011 Jul 15;89(1):111-20.
  60. Patnaik S, Tripathi SK, Goyal R, Arora A, Mitra K, Villaverde A, Vázquez E, Shukla Y, Kumar P, Gupta KC.Polyethylenimine-polyethyleneglycol-bis(aminoethylphosphate) nanoparticles mediated efficient DNA and siRNA transfection in mammalian cells.Soft Matter. 2011 Jul; (7) 6103-6112.
  61. Batra J, Das S, Chatterjee R, Chandra S, Ghosh B.Monocyte chemotactic protein (MCP3) promoter polymorphism is associated with atopic asthma in the Indian population.J Allergy Clin Immun. 2011 Jul;128(1):239-242.
  62. Abhimanyu, Mangangcha IR, Jha P, Arora K, Mukerji M, Banavaliker JN; Indian Genome Variation Consortium, Brahmachari V, Bose M.Differential serum cytokine levels are associated with cytokine gene polymorphisms in north Indians with active pulmonary tuberculosis.Infect Genet Evol. 2011 Jul;11(5):1015-22.
  63. Kaushal A, Goyal L, Kumar A.Recent advances in diagnosis of rheumatic heart disease.Biochem Bioph Res Co. 2011 Jun; 4(1): 1-6.
  64. Yang X, Xu S; HUGO Pan-Asian SNP Consortium; Indian Genome Variation Consortium.Identification of close relatives in the HUGO Pan-Asian SNP database.PLoS ONE. 2011;6(12):e29502.
  65. Goyal R, Bansal R, Tyagi S, Shukla Y, Kumar P, Gupta KC.1,4-Butanediol diglycidyl ether (BDE)-crosslinked PEI-g-imidazole nanoparticles as nucleic acid-carriers in vitro and in vivo.Mol Biosyst. 2011 Jun;7(6):2055-65.
  66. Clark KJ, Balciunas D, Pogoda HM, Ding Y, Westcot SE, Bedell VM, Greenwood TM, Urban MD, Skuster KJ, Petzold AM, Ni J, Nielsen AL, Patowary A, Scaria V, Sivasubbu S, Xu X, Hammerschmidt M, Ekker SC.In vivo protein trapping produces a functional expression codex of the vertebrate proteome.Nat Methods. 2011 Jun;8(6):506-15.
  67. Bora U, Kannoujia DK, Kumar S, Sharma P, Nahar P.Photochemical activation of polyethylene glycol and its application in PEGylation of proteinProcess Biochem. 2011 Jun; 46(6): 1380-3.
  68. Gupta AK, Pathak R, Singh B, Gautam H, Kumar R, Kumar R, Arora R, Gautam H.Proteomic analysis of global changes in protein expression during exposure of gamma radiation in Bacillus sp. HKG 112 isolated from saline soil.J Microbiol Biotechn. 2011 Jun;21(6):574-81.
  69. Stobdan T, Ali Z, Khan AP, Nejatizadeh A, Ram R, Thinlas T, Mohammad G, Norboo T, Himashree G, Pasha MAQ.Polymorphisms of renin-angiotensin system genes as a risk factor for high-altitude pulmonary oedema.J Renin-Angio-Aldo S. 2011 Jun; 12(2): 93-101.
  70. Malhotra S, Balwani S, Dhawan A, Singh BK, Kumar S, Thimmulappa R, Biswal S, Olsen CE, Van Der Eycken E, Prasad AK, Ghosh B, Parmar VS.Synthesis and biological activity evaluation of N-protected isatin derivatives as inhibitors of ICAM-1 expression on human endothelial cells.MedChemComm. 2011 Jun; 8(2): 743-751.
  71. Kumar A, Saigal K, Malhotra K, Sinha KM, Taneja B.Structural and functional characterization of Rv2966c protein reveals an RsmD-like methyltransferase from Mycobacterium tuberculosis and the role of its N-terminal domain in target recognition.J Biol Chem. 2011 Jun 3;286(22):19652-61.
  72. Bhartiya D, Laddha SV, Mukhopadhyay A, Scaria V.miRvar: A comprehensive database for genomic variations in microRNAs.Hum Mutat. 2011 Jun;32(6):E2226-45.
  73. Kumar J, Yumnam S, Basu T, Ghosh A, Garg G, Karthikeyan G, Sengupta S.Association of polymorphisms in 9p21 region with CAD in North Indian population: replication of SNPs identified through GWAS.Clin Genet. 2011 Jun;79(6):588-93.
  74. Saroha A, Biswas S, Chatterjee BP, Das HR.Altered glycosylation and expression of plasma alpha-1-acid glycoprotein and haptoglobin in rheumatoid arthritis.J Chromatogr B Analyt Technol Biomed Life Sci. 2011 Jun 15;879(20):1839-43.
  75. Kumar A, John L, Maity S, Manchanda M, Sharma A, Saini N, Chakraborty K, Sengupta S.Converging evidence of mitochondrial dysfunction in a yeast model of homocysteine metabolism imbalance.J Biol Chem. 2011 Jun 17;286(24):21779-95.
  76. Balwani S, Nandi D, Jaisankar P, Ghosh B.2-Methyl-pyran-4-one-3-O-?-D-glucopyranoside isolated from leaves of Punica granatum inhibits the TNF?-induced cell adhesion molecules expression by blocking nuclear transcription factor-?B (NF-?B).Biochimie. 2011 May;93(5):921-30.
  77. Khan JA, Mandal TK, Das TK, Singh Y, Pillai B, Maiti S.Magnetite (Fe(3)O(4)) nanocrystals affect the expression of genes involved in the TGF-beta signalling pathway.Mol Biosyst. 2011 May;7(5):1481-6.
  78. Nair S, Kukreja N, Singh BP, Arora N.Identification of B cell epitopes of alcohol dehydrogenase allergen of Curvularia lunata.PLoS ONE. 2011 May;6(5):e20020.
  79. Datta S, Alam MP, Majumdar SS, Mehta AK, Maiti S, Wadhwa N, Brahmachari V.Nucleosomal occupancy and CGG repeat expansion: a comparative analysis of triplet repeat region from mouse and human fragile X mental retardation gene 1.Chromosome Res. 2011 May;19(4):445-55.
  80. Yadav AK, Kumar D, Dash D.MassWiz: a novel scoring algorithm with target-decoy based analysis pipeline for tandem mass spectrometry.J Proteome Res. 2011 May 6;10(5):2154-60.
  81. Kalia VC, Purohit HJ.Quenching the quorum sensing system: potential antibacterial drug targets.Crit Rev Microbiol. 2011 May;37(2):121-40.
  82. Naik RJ, Chandra P, Mann A, Ganguli M.Exogenous and cell surface glycosaminoglycans alter DNA delivery efficiency of arginine and lysine homopeptides in distinctly different ways.J Biol Chem. 2011 May 27;286(21):18982-93.
  83. Chaudhuri R, Ansari FA, Raghunandanan MV, Ramachandran S.FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens.BMC Genomics. 2011 Apr 15;12:192.
  84. Gupta P, Bhatia S, Dhawan A, Balwani S, Sharma S, Brahma R, Singh R, Ghosh B, Parmar VS, Prasad AK.Selective biocatalytic aminolysis of (±)-epichlorohydrin: synthesis and ICAM-1 inhibitory activity of (S)-(+)-3-arylamino-1-chloropropan-2-ols.Bioorgan Med Chem. 2011 Apr 1;19(7):2263-8.
  85. Adlakha YK, Saini N.MicroRNA-128 downregulates Bax and induces apoptosis in human embryonic kidney cells.Cell Mol Life Sci. 2011 Apr;68(8):1415-28.
  86. Ahmad T, Mabalirajan U, Sharma A, Aich J, Makhija L, Ghosh B, Agrawal A.Simvastatin Improves Epithelial Dysfunction and Airway Hyperresponsiveness: From ADMA to Asthma.Am J Resp Cell Mol. 2011 Apr;44(4):531-9.
  87. Singh YP, Dhall P, Mathur RM, Jain RK, Thakur VV, Kumar V, Kumar R, Kumar A.Bioremediation of pulp and paper mill effluent by tannic acid degrading Enterobacter sp.Water, Air, and Soil Pollution. 2011; 218(1-4): 693-701.
  88. Selvakumaran S, Kapley A, Kashyap SM, Daginawala HF, Kalia VC, Purohit HJ.Diversity of aromatic ring-hydroxylating dioxygenase gene in Citrobacter.Bioresource Technol. 2011 Apr;102(7):4600-9.
  89. Ram A, Balachandar S, Vijayananth P, Singh VP.Medicinal plants useful for treating chronic obstructive pulmonary disease (COPD): current status and future perspectives.Fitoterapia. 2011 Mar;82(2):141-51.
  90. Sajid A, Arora G, Gupta M, Upadhyay S, Nandicoori VK, Singh Y.Phosphorylation of Mycobacterium tuberculosis Ser/Thr phosphatase by PknA and PknB.PLoS ONE. 2011 Mar 9;6(3):e17871.
  91. Tripathi P, Nair S, Singh BP, Arora N.Molecular and immunological characterization of subtilisin like serine protease, a major allergen of Curvularia lunata.Immunobiology. 2011 Mar;216(3):402-8.
  92. Silla Y, Chandamouli B, Maiti S, Sengupta S.A single nucleotide polymorphism in transcobalamin II (I5V) induces structural changes in the protein as revealed by molecular modeling studies.Biochemistry. 2011 Mar 1;50(8):1396-402.
  93. Agrawal P, Kumar S, Jaiswal YK, Das HR, Das RH.A Mesorhizobium lipopolysaccharide (LPS) specific lectin (CRL) from the roots of nodulating host plant, Cicer arietinum.Biochimie. 2011 Mar;93(3):440-9.
  94. Meena LS, Rajni.Cloning and characterization of engA, a GTP-binding protein from Mycobacterium tuberculosis H(37)Rv.Biologicals. 2011 Mar;39(2):94-9.
  95. Agrawal A, Mabalirajan U, Ahmad T, Ghosh B.Emerging interface between metabolic syndrome and asthma.Am J Resp Cell Mol. 2011 Mar;44(3):270-5.
  96. Goyal R, Tripathi SK, Tyagi S, Ram KR, Ansari KM, Kumar P, Shukla Y, Chowdhuri DK, Gupta KC.Gellan Gum-PEI Nanocomposites as Efficient Gene Delivery Agents.J Biomed Nanotech. 2011 Feb;7(1):38-9.
  97. Goyal R, Tripathi SK, Tyagi S, Sharma A, Kumar P, Ram KR, Chowdhuri DK, Shukla Y, Gupta KC.In vitro and in vivo evaluation of linear polyethylenimine nanoparticles.J Biomed Nanotech. 2011 Feb;7(1):52-3.
  98. Maiti S.Nanotoxicity of gold and iron nanoparticles.J Biomed Nanotech. 2011 Feb;7(1):65.
  99. Kumar A, Bhatnagar A, Gupta S, Khare S, Suman.sof gene as a specific genetic marker for detection of Streptococcus pyogenes causing pharyngitis and rheumatic heart disease.Cell Mol Biol. 2011 Feb 12;57(1):26-30.
  100. Das RK, Sharma P, Nahar P, Bora U.Synthesis of gold nanoparticles using aqueous extract of Calotropis procera latex.Materials Letters. 2011 Feb; 65(4): 610-3.
  101. Kumar S, Bose D, Suryawanshi H, Sabharwal H, Mapa K, Maiti S.Specificity of RSG-1.2 peptide binding to RRE-IIB RNA element of HIV-1 over Rev peptide is mainly enthalpic in origin.PLoS ONE. 2011 Aug;6(8):e23300.
  102. Verma V, Raju SC, Kapley A, Kalia VC, Kanade GS, Daginawala HF, Purohit HJ.Degradative potential of Stenotrophomonas strain HPC383 having genes homologous to dmp operon.Bioresource Technol. 2011 Feb;102(3):3227-33.
  103. Singh M, Bhatnagar P, Srivastava AK, Kumar P, Shukla Y, Gupta KC.Enhancement of Cancer Chemosensitization Potential of Cisplatin by Tea Polyphenols Poly(lactide-co-glycolide) Nanoparticles.J Biomed Nanotech. 2011 Jan; 7(1): 202-202.
  104. Bhatt SP, Nigam P, Misra A, Guleria R, Luthra K, Vaidya M, Jain SK, Pasha MAQ.SREBP-2 1784 G/C genotype is associated with non-alcoholic fatty liver disease in north Indians.Dis Markers. 2011 Jan 1;31(6):371-7.
  105. Kumar K, Kumar S, Kurupati RK, Seth MK, Mohan A, Hussain ME, Pasha S.Intracellular cAMP assay and Eu-GTP-yS binding studies of chimeric opioid peptide YFa.Eur J Pharmacol. 2011 Jan 10;650(1):28-33.
  106. Ahmad T, Mabalirajan U, Hasija K, Ghosh B, Agrawal A.Mepacrine treatment attenuates allergic airway remodeling segregated from airway inflammation in mice.Int Immunopharmacol. 2011 Jan;11(1):74-8.
  107. Sethi T, Agrawal A.Structure and function of the tuberculous lung: Considerations for inhaled therapies.Tuberculosis. 2011 Jan;91(1):67-70.
  108. Pandey AK, Verma G, Vig S, Srivastava S, Srivastava AK, Datta M.miR-29a levels are elevated in the db/db mice liver and its overexpression leads to attenuation of insulin action on PEPCK gene expression in HepG2 cells.Mol Cell Endocrinol. 2011 Jan 30;332(1-2):125-33.
  109. Yadav V, Shitiz K, Pandey R, Yadav J.Chlorophenol stress affects aromatic amino acid biosynthesis-a genome-wide study.Yeast. 2011 Jan;28(1):81-91.
  110. Kalia VC, Mukherjee T, Bhushan A, Joshi J, Shankar P, Huma N.Analysis of the unexplored features of rrs (16S rDNA) of the Genus Clostridium.BMC Genomics. 2011 Jan 11;12:18.
  111. Singh R, Rajni, Meena A, Meena LS.Multidrug resistant and Extensively drug resistant TB: A Nuisance to Medical Science.J Bacteriol Parast. 2011 Jan; 2(1):105.
  112. Periwal V, Rajappan JK, Drug Discovery Consortium OS, Jaleel AU, Scaria V.Predictive models for anti-tubercular molecules using machine learning on high-throughput biological screening datasets.BMC Res Notes. 2011 Nov 18;4(1):504.
  113. Kumar A., Asha D, Singh S, Khare S.Opc gene as a specific genetic marker for human bacterial meningitis.J Biosci Med. 2011 Oct; 1(7), 1-4.
  114. Kaur K, Bhatia H, Datta M.MicroRNAs in hepatic pathophysiology in diabetes.World J Diabetes. 2011 Oct 15;2(10):158-63.
  115. Gupta R, Sharma R.Metagenomics for environmental and industrial microbiologyScience Culture. 2011 Feb; 77: 27-31.
  116. Patel SKS, Singh M, Kalia VC.Hydrogen and Polyhydroxybutyrate Producing Abilities of Bacillus spp. From Glucose in Two Stage System.Ind J Microb. 2011 Oct; 51(4): 418-23.
  117. Kalia VC, Raju SC, Purohit HJ.Genomic analysis reveals versatile organisms for quorum quenching enzymes: acyl-homoserine lactone-acylase and -lactonase.Open Microbiol J. 2011 Feb;5:1-13.
  118. Biswas S, Kushwaha SK, Mandal RS, Roy S, Das HR.Structural Model Based Designing of Inhibitors for Glial Fibrillary Acidic Protein.Ann Biol Res. 2011 Jan; 2 (1) :40-50.
  119. Agrawal A, Agrawal A, Pandit M, Kalyanpur A.Systematic survey of discrepancy rates in an international teleradiology service.Emerg Radiol. 2011 Jan;18(1):23-9.
  120. Goyal R, Tripathi SK, Swami A, Gupta KC.Efficient delivery of nucleic acids by using modified polyethylenimine- based nanoparticles.Int J Nanosci. 2011 Apr; 10(1-2): 193-197.
  121. Grover S, Gupta M, Kukreti R.Challenges and recommendations for conducting epidemiological studies in the field of epilepsy pharmacogenetics.Ind J Hum Genet. 2011 May;17 Suppl 1:S4-S11.
  122. Rajni, Rao N, Meena LS.Biosynthesis and Virulent Behavior of Lipids Produced by Mycobacterium tuberculosis: LAM and Cord Factor: An Overview.Biotechnol Res Int. 2011;2011:274693.
  123. Singla D, Anurag M, Dash D, Raghava GP.A web server for predicting inhibitors against bacterial target GlmU protein.BMC Pharmacol. 2011 Jul 6;11:5.
  124. Lall M, Thakur S, Puri R, Verma I, Mukerji M, Jha P.A 54 Mb 11qter duplication and 0.9 Mb 1q44 deletion in a child with laryngomalacia and agenesis of corpus callosum.Mol Cytogenet. 2011 Sep 21;4:19.
  125. Pathak R, Singh R, Singh A, Gautam H, Dhaker AS, Kumar R, Arora R, Gautam HK.Assessment of antibacterial and free radical scavenging activity in psychrophilic Arthrobacter sp.Pharmacologyonline. 2011 Jan; 1: 344-355.
  126. Dissanayake VHW, Samarakoon P, Scaria V, Patowary A, Sivasubbu S, Gokhale RS.The Sri Lankan Personal Genome Project: an overview.Sri Lanka J Biomed Info. 2011 Jan; 2(1):4-8
  127. Sharma A.Transcriptomic data-mining approach for identifying potential pharmacogenetic candidates in antiepileptic drug response.Ind J Hum Genet. 2011 May;17 Suppl 1:S58-9.
  128. Kumar R, Singh S, Singh B, Bhadoria DP, Chhillar AK, Kumar M, Sharma GL.Significance of carbohydrate rich early stage antigens of Aspergillus fumigatus in diagnosis of aspergillosis.Trends Carbohyd Res. 2011 Feb; 3(2):31-37.
  129. Kumar R, Sharma A, Dhall P, Kulshreshtha NM, Kumar A.Neutralization of alkaline waste-waters using a blend of microorganisms.Proce World Acad Sci Engin Tech. 2011 Apr; 76: 503-506.
  130. Indian Diabetes Consortium.INDICO: A resource for epigenomic study of Indians undergoing socioeconomic transition.HUGO J. 2011 Nov; 5:65-69.
  131. Rajni, Meena LS.Unique characteristic features of mycobacterium tuberculosis in relation to immune system.Am J Immunol. 2011 Aug; 7(1): 1-8.
  132. Singh P, Mohammad F, Sharma A.Transcriptomic analysis in a Drosophila model identifies previously implicated and novel pathways in the therapeutic mechanism in neuropsychiatric disorders.Front Neurosci. 2011 Mar 31;5:161.
  133. Gupta M, Kukreti R.In silico approaches for pharmacogenomics studies: Application towards search for sequence of clinical significance.(Book Chapter). Bioinformatics (In Silico Biology: Concepts and Applications) for Narosa Publications.
  134. Bhardwaj A, Scaria V, Thomas Z, Adayikkoth S, Open Source Drug Discovery (OSDD) Consortium & Brahmachari SK.Collaborative Tools to Accelerate Neglected Disease Research: the Open Source Drug Discovery Model .(Book Chapter). Collaborative Computational Technologies for Biomedical Research.
  135. Chaudhuri R, Verma S, Shah AR, Paul C, Chakraborty S, Puniya BL, Mandal RS, Ramachandran S.Biological Data Modelling and Scripting in R.(Book Chapter). Bioinformatics - Computational Biology and Modeling.
  136. Ramachandran S, Chaudhuri R, Verma R, Shah AR, Sen R, Paul C.Systems Immunology: Data modeling and scripting in R.(Book Chapter). Encyclopedia of Systems Biology, Springer Science + Business Media, LLC.W. Dubitsky, O. Wolkenhauer, K. Cho, & H. Yokota (eds.)

Pulications List - 2010| Download PDF

  1. Natarajan VT, Singh A, Kumar AA, Sharma P, Kar HK, Marrot L, Meunier JR, Natarajan K, Rani R, Gokhale RS.Transcriptional upregulation of Nrf2-dependent phase II detoxification genes in the involved epidermis of vitiligo vulgaris.J Invest Dermatol. 2010 Dec;130(12):2781-9.
  2. Kumar N, Taneja KK, Kumar A, Nayar D, Taneja B, Aneja S, Behari M, Kalra V, Bansal SK.Novel mutation in ATP-binding domain of ABCD1 gene in adrenoleucodystrophy.J Genet. 2010 Dec; 89(4): 473-477.
  3. Grover S, Talwar P, Baghel R, Kaur H, Gupta M, Gourie-Devi M, Bala K, Sharma S, Kukreti R.Genetic variability in estrogen disposition: Potential clinical implications for neuropsychiatric disorders.Am J Med Genet B. 2010 Dec 5;153B(8):1391-410.
  4. Sharma D, Dutta BK, Singh AB.Exposure to indoor fungi in different working environments: A comparative study.Aerobiologia. 2010 Dec; 26(4):327-337.
  5. Singh A, Chauhan NS, Thulasiram HV, Taneja V, Sharma R.Identification of two flavin monooxygenases from an effluent treatment plant sludge metagenomic library.Bioresource Technol. 2010 Nov;101(21):8481-4.
  6. Singh B, Sharma GL, Oellerich M, Kumar R, Singh S, Bhadoria DP, Katyal A, Reichard U, Asif AR.Novel cytosolic allergens of Aspergillus fumigatus identified from germinating conidia.J Proteome Res. 2010 Nov 5;9(11):5530-41.
  7. Kaur H, Scaria V, Maiti S.Locked onto the Target: Increasing the Efficiency of Antagomirzymes Using Locked Nucleic Acid Modifications.Biochemistry. 2010 Nov 9;49(44):9449-56.
  8. Verma V, Raju SC, Kapley A, Kalia VC, Daginawala HF, Purohit HJ.Evaluation of genetic and functional diversity of Stenotrophomonas isolates from diverse effluent treatment plants.Bioresource Technol. 2010 Oct; 101(20): 7744-7753.
  9. Patel SKS, Purohit HJ, Kalia VC.Dark fermentative hydrogen production by defined mixed microbial cultures immobilized on ligno-cellulosic waste materialsInt J Hydrogen Energ. 2010 Oct; 35(19): 10674-10681.
  10. Suryawanshi H, Scaria V, Maiti S.Modulation of microRNA function by synthetic ribozymes.Mol Biosyst. 2010 Oct 1;6(10):1807-9.
  11. Basundra R, Kumar A, Amrane S, Verma A, Phan AT, Chowdhury S.A novel G-quadruplex motif modulates promoter activity of human thymidine kinase 1.FEBS J. 2010 Oct;277(20):4254-64.
  12. Mukhopadhyay A, Kramer JM, Merkx G, Lugtenberg D, Smeets DF, Oortveld MA, Blokland EA, Agrawal J, Schenck A, van Bokhoven H, Huys E, Schoenmakers EF, van Kessel AG, van Nouhuys CE, Cremers FP.CDK19 is disrupted in a female patient with bilateral congenital retinal folds, microcephaly and mild mental retardation.Hum Genet. 2010 Sep;128(3):281-91.
  13. Gupta P, Balwani S, Kumar S, Aggarwal N, Rossi M, Paumier S, Caruso F, Bovicelli P, Sasso L, Depass AL, Prasad AK, Parmar VS, Ghosh B.beta-sitosterol among other secondary metabolites of Piper galeatum shows inhibition of TNFalpha-induced cell adhesion molecule expression on human endothelial cells.Biochimie. 2010 Sep;92(9):1213-21.
  14. Zinellu A, Sotgia S, Scanu B, Pisanu E, Sanna M, Sati S, Deiana L, Sengupta S, Carru C.Determination of homocysteine thiolactone, reduced homocysteine, homocystine, homocysteine–cysteine mixed disulfide, cysteine and cystine in a reaction mixture by overimposed pressure/voltage capillary electrophoresis.Talanta. 2010 Sep 15;82(4):1281-5.
  15. Kukreti S, Kaur H, Kaushik M, Bansal A, Saxena S, Kaushik S, Kukreti R.Structural polymorphism at LCR and its role in beta-globin gene regulation.Biochimie. 2010 Sep;92(9):1199-206.
  16. Grover S, Bala K, Sharma S, Gourie-Devi M, Baghel R, Kaur H, Gupta M, Talwar P, Kukreti R.Absence of a general association between ABCB1 genetic variants and response to antiepileptic drugs in epilepsy patients.Biochimie. 2010 Sep;92(9):1207-12.
  17. Agarwal T, Roy S, Chakraborty TK, Maiti S.Selective targeting of G-quadruplex using furan-based cyclic homooligopeptides: effect on c-MYC expression.Biochemistry. 2010 Sep 28;49(38):8388-97.
  18. Sethi D, Kumar A, Gandhi RP, Kumar P, Gupta KC.New protocol for oligonucleotide microarray fabrication using SU-8-coated glass microslides.Bioconjugate Chem. 2010 Sep 15;21(9):1703-8.
  19. Chhabra R, Dubey R, Saini N.Cooperative and individualistic functions of the microRNAs in the miR-23a~27a~24-2 cluster and its implication in human diseases.Mol Cancer. 2010 Sep 3;9(1):232.
  20. Rajni, Meena LS.Guanosine triphosphatases as novel therapeutic targets in tuberculosis.Int J Infect Dis. 2010 Aug;14(8):e682-7.
  21. Patel MK, Solanki P, Kumar A, Gupta S, Khare S, Malhotra BD.Electrochemical DNA sensor for Neisseria meningitidis detection.Biosens Bioelectron. 2010 Aug; 25(12): 2586-2591.
  22. Chauhan G, Spurgeon CJ, Tabassum R, Bhaskar S, Kulkarni SR, Mahajan A, Chavali S, Kumar MV, Prakash S, Dwivedi OP, Ghosh S, Yajnik CS, Tandon N, Bharadwaj D, Chandak GR.Impact of common variants of PPARG, KCNJ11, TCF7L2, SLC30A8, HHEX, CDKN2A, IGF2BP2 and CDKAL1 on the risk of type 2 diabetes in 5164 Indians.Diabetes. 2010 Aug; 59(8):2068-74.
  23. Sengupta M, Chakraborty A; Indian Genome Variation Consortium, Ray K.Analysis of single nucleotide polymorphisms of PRNP gene in twenty-four ethnic groups of India.J Genet. 2010 Aug;89(2):247-51.
  24. Gokhale SA, Roshan R, Khetan V, Pillai B, Gadgil CJ.A kinetic model of TBP auto-regulation exhibits bistability.Biol Direct. 2010 Aug 5;5:50.
  25. Agarwal T, Roy S, Chakraborty TK, Maiti S.Furan based cyclic homo-oligopeptides bind G-quadruplex selectively and repress c-MYC transcription.Bioorg Med Chem Lett. 2010 Aug 1;20(15):4346-9.
  26. Vats ID, Chaudhary S, Sharma A, Nath M, Pasha S.Rationally designed chimeric peptide of met-enkephalin and FMRFa-[D-Ala(2,)p-Cl-Phe(4)]YFa induce multiple opioid receptors mediated antinociception and up-regulate their expression.Eur J Pharmacol. 2010 Jul 25;638(1-3):54-60.
  27. Verma G, Datta M.IL-1beta induces ER stress in a JNK dependent manner that determines cell death in human pancreatic epithelial MIA PaCa-2 cells.Apoptosis. 2010 Jul;15(7):864-76.
  28. Grover S, Gourie-Devi M, Baghel R, Sharma S, Bala K, Gupta M, Narayanasamy K, Varma B, Gupta M, Kaur K, Talwar P, Kaur H, Giddaluru S, Sharma A, Brahmachari SK, Indian Genome Variation Consortium, Kukreti R.Genetic profile of patients with epilepsy on first-line antiepileptic drugs and potential directions for personalized treatment.Pharmacogenomics. 2010 Jul;11(7):927-41.
  29. Bhartiya D, Maini J, Sharma M, Joshi P, Laddha SV, Jalali S, Patowary A, Purkanti R, Lalwani M, Singh AR, Chauhan R, Singh N, Bhardwaj A, Scaria V, Sivasubbu S.FishMap Zv8 update--a genomic regulatory map of zebrafish.Zebrafish. 2010 Jun;7(2):179-80.
  30. Sharma S, Rathored J, Ghosh B, Sharma SK.Genetic polymorphisms in TNF genes and tuberculosis in North Indians.BMC Infect Dis. 2010 Jun 10;10(1):165.
  31. Meena LS, Rajni.Survival mechanisms of pathogenic Mycobacterium tuberculosis H37Rv.FEBS J. 2010 Jun;277(11):2416-27.
  32. Qadar Pasha MA, Newman JH.High-altitude disorders: pulmonary hypertension: pulmonary vascular disease: the global perspective.Chest. 2010 Jun;137(6 Suppl):13S-19S.
  33. Santhiya D, Maiti S.An investigation on interaction between 14mer DNA oligonucleotide and CTAB by fluorescence and fluorescence resonance energy transfer studies.J Phys Chem B. 2010 Jun 10;114(22):7602-8.
  34. Agrawal P, Kumar S, Das HR.Mass spectrometric characterization of isoform variants of peanut (Arachis hypogaea) stem lectin (SL-I).J Proteomics. 2010 Jun 16;73(8):1573-86.
  35. Nikopoulos K, Venselaar H, Collin RW, Riveiro-Alvarez R, Boonstra FN, Hooymans JM, Mukhopadhyay A, Shears D, van Bers M, de Wijs IJ, Sijmons RH, Tilanus MA, van Nouhuys CE, Ayuso C, Hoefsloot LH, Cremers FP.Overview of the mutation spectrum in familial exudative vitreoretinopathy and Norrie disease with identification of 21 novel variants in FZD4, LRP5, and NDP.Hum Mutat. 2010 Jun;31(6):656-66.
  36. Madan T, Reid KB, Clark H, Singh M, Nayak A, Sarma PU, Hawgood S, Kishore U.Susceptibility of mice genetically deficient in SP-A or SP-D gene to invasive pulmonary aspergillosis.Mol Immunol. 2010 Jun;47(10):1923-30.
  37. Stobdan T, Kumar R, Mohammad G, Thinlas T, Norboo T, Iqbal M, Qadar Pasha MA.Probable role of beta2-adrenergic receptor gene haplotype in high-altitude pulmonary oedema.Respirology. 2010 May;15(4):651-8.
  38. Arora G, Sajid A, Gupta M, Bhaduri A, Kumar P, Basu-Modak S, Singh Y.Understanding the role of PknJ in Mycobacterium tuberculosis: biochemical characterization and identification of novel substrate pyruvate kinase A.PLoS ONE. 2010 May 24;5(5):e10772.
  39. Kumar J, Garg G, Karthikeyan G, Sengupta S.Cystathionine beta-synthase 844Ins68 polymorphism is not associated with the levels of homocysteine and cysteine in an Indian population.Biomarkers. 2010 May;15(3):283-7.
  40. Mahajan A, Tabassum R, Chavali S, Dwivedi OP, Chauhan G, Tandon N, Bharadwaj D.Obesity-dependent association of TNF-LTA locus with type 2 diabetes in North Indians.J Mol Med. 2010 May;88(5):515-22.
  41. Kumar A, Balachandran Y, Gupta S, Khare S, Suman.Quick PCR based diagnosis of typhoid using specific genetic markers.Biotechnol Lett. 2010 May;32(5):707-12.
  42. Verma N, Tripathi SK, Chaudhury Indrajit I, Das HR, Das RH.iNOS-targeted 10-23 DNAzyme reduces LPS-induced systemic inflammation and mortality in mice.Shock. 2010 May;33(5):493-9.
  43. Singh I, Faruq M, Mukherjee O, Jain S, Pal PK, Srivastav MV, Behari M, Srivastava AK, Mukerji M.North and South Indian Populations Share a Common Ancestral Origin of Friedreich's Ataxia but Vary in Age of GAA Repeat Expansion.Ann Hum Genet. 2010 May;74(3):202-10.
  44. Patnaik S, Mohammad A, Pathak A, Kurupati R, Singh Y, Gupta KC.Crosslinked polyethylenimine-hexametaphosphate nanoparticles to deliver nucleic acids therapeutics.Nanomedicine. 2010 Apr;6(2):344-54.
  45. Vats ID, Snehlata, Nath M, Pasha MA, Pasha S.Effect of chronic intra-peritoneally administered chimeric peptide of met-enkephalin and FMRFa-[d-Ala(2)]YFa-on antinociception and opioid receptor regulation.Eur J Pain. 2010 Mar;14(3):295.e1-295.e9.
  46. Biswas A, Sadhukhan T, Majumder S, Misra AK, Das SK, Indian Genome Variation Consortium, Ray K, Ray J.Evaluation of PINK1 variants in Indian Parkinson's disease patients.Parkinsonism Relat D. 2010 Mar; 16(3): 167-171.
  47. Sonal, Shrivastava S, Mishra M, Kantaraja C, Kumar S, Sharma AK.Peptide Nucleic Acids (PNA): New Generation anti-gene molecules.(Book Chapter) 2010 Apr; Basic Techniques in Peptide Synthesis; IVRI: 137-152.
  48. Halder R, Halder K, Sharma P, Garg G, Sengupta S, Chowdhury S.Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.Mol Biosyst. 2010 Dec 8;6(12):2439-47.
  49. Mabalirajan U, Ahmad T, Leishangthem GD, Dinda AK, Agrawal A, Ghosh B.L-arginine reduces mitochondrial dysfunction and airway injury in murine allergic airway inflammation.Int Immunopharmacol. 2010 Dec;10(12):1514-9.
  50. Aggarwal S, Negi S, Jha P, Singh PK, Stobdan T, Pasha MA, Ghosh S, Agrawal A; Indian Genome Variation Consortium, Prasher B, Mukerji M.EGLN1 involvement in high-altitude adaptation revealed through genetic analysis of extreme constitution types defined in Ayurveda.P Natl Acad Sci USA 2010 Nov 2;107(44):18961-6.
  51. Kumar M, Mabalirajan U, Agrawal A, Ghosh B.Proinflammatory role of let-7 miRNAs in experimental asthma?J Biol Chem. 2010 Nov 26;285(48):le19.
  52. Joshi S, Bisht GS, Rawat DS, Kumar A, Kumar R, Maiti S, Pasha S.Interaction studies of novel cell selective antimicrobial peptides with model membranes and E. coli ATCC 11775.BBA-Biomembranes. 2010 Oct;1798(10):1864-75.
  53. Tiku DK, Kumar A, Chaturvedi R, Makhijani SD, Manoharan A, Kumar R.Holistic bioremediation of pulp mill effluents using autochthonous bacteria.Int Biodeter Biodegr. 2010 Jun; 64(3): 173-183.
  54. Kulshreshtha NM, Kumar A, Dhall P, Gupta S, Bisht G, Pasha S, Singh VP, Kumar R.Neutralization of alkaline industrial wastewaters using Exiguobacterium sp.Int Biodeter Biodegr 2010 Jun; 64(3): 191-196.
  55. Kumar A, Dhall P, Kumar R.Redefining BOD:COD ratio of pulp mill industrial wastewaters in BOD analysis by formulating a specific microbial seed.Int Biodeter Biodegr 2010 Jun; 64(3): 197-202.
  56. Rani A, Jain S, Kumar R, Kumar A.1,5-Bis (2-Hydroxyphenyl)Pent-1,4-Diene-3-One: A Lead Compound for the Development of Broad-spectrum Antibacterial Agents.S Afr J Chem. 2010 Apr; 63 :1-5.
  57. Suryawanshi H, Sabharwal H, Maiti S.Thermodynamics of Peptide-RNA Recognition: The Binding of a Tat Peptide to TAR RNA.J Phys Chem B. 2010 Sep 2;114(34):11155-63.
  58. Grover S, Talwar P, Gourie-Devi M, Gupta M, Bala K, Sharma S, Baghel R, Kaur H, Sharma A, Kukreti R.Genetic polymorphisms in sex hormone metabolizing genes and drug response in women with epilepsy.Pharmacogenomics. 2010 Nov;11(11):1525-34.
  59. Pandey MK, Balwani S, Sharma PK, Parmar VS, Ghosh B, Watterson AC.Design, Synthesis and Anti-Inflammatory Evaluation of PEGylated 4-Methyl & 4, 8-Dimethylcoumarins.Eur J Pharm Sci. 2010 Jan 31;39(1-3):134-40.
  60. Kohaar I, Kumar J, Thakur N, Hussain S, Niyaz MK, Das BC, Sengupta S, Bharadwaj M.Homocysteine levels are associated with cervical cancer independent of methylene tetrahydrofolate reductase gene (MTHFR) polymorphisms in Indian population.Biomarkers. 2010 Feb;15(1):61-8.
  61. Sharma P, Basir SF, Nahar P.Photoimmobilization of unmodified carbohydrates on activated surface.J Colloid Interf Sci. 2010 Feb 1;342(1):202-4.
  62. Patnaik S, Arif M, Pathak A, Singh N, Gupta KC.PEI-Alginate nanocomposites: Efficient non-viral vectors for nucleic acids.Int J Pharm. 2010 Jan; 385(1-2):194-202.
  63. Verma N, Tripathi SK, Chaudhury I, Das HR, Das RH.Inducible nitric oxide synthase (iNOS) targeted 10-23 DNAzyme reduces lipopolysaccharide (LPS) induced systemic inflammation and mortality in mice.Shock. 2010 May;33(5):493-9.
  64. Verma N, Tripathi SK, Sahu D, Das HR, Das RH.Evaluation of inhibitory activities of plant extracts on production of LPS-stimulated pro-inflammatory mediators in J774 murine macrophages.Mol Cell Biochem. 2010 Mar;336(1-2):127-35.
  65. Nejatizadeh A, Kumar R, Stobdan T, Goyal AK, Gupta M, Tyagi S, Pasha MA.CYP11B2 gene haplotypes independently and in concurrence with aldosterone and aldosterone to renin ratio increase the risk of hypertension.Clin Biochem. 2010 Jan; 43(1-2): 136-141.
  66. Tabassum R, Mahajan A, Chauhan G, Dwivedi O, Ghosh S, Tandon N, Bharadwaj D.Evaluation of DOK5 as a susceptibility gene for type 2 diabetes and obesity in North Indian population.BMC Med Genet. 2010 Feb 27;11(1):35.
  67. Tripathi P, Nair S, Singh BP, Arora N.Mutated glutathione S-transferase in combination with reduced glutathione shows a synergistic effect in ameliorating oxidative stress and airway inflammation.Free Radical Bio Med. 2010 Mar 15;48(6):839-44.
  68. Vibhuti A, Arif E, Mishra A, Deepak D, Singh B, Rahman I, Mohammad G, Pasha MA.CYP1A1, CYP1A2 and CYBA gene polymorphisms associated with oxidative stress in COPD.Clin Chim Acta. 2010 Apr 2;411(7-8):474-480.
  69. Sharma A, Chavali S, Tabassum R, Tandon N, Bharadwaj D.Gene prioritization in Type 2 Diabetes using domain interactions and network analysis.BMC Genomics. 2010 Feb 2;11:84.
  70. Mabalirajan U, Ahmad T, Leishangthem GD, Joseph DA, Dinda AK, Agrawal A, Ghosh B.Beneficial effects of high dose of L-arginine on airway hyperresponsiveness and airway inflammation in a murine model of asthma.J Allergy Clin Immun. 2010 Mar;125(3):626-35.
  71. Nikopoulos K, Gilissen C, Hoischen A, van Nouhuys CE, Boonstra FN, Blokland EA, Arts P, Wieskamp N, Strom TM, Ayuso C, Tilanus MA, Bouwhuis S, Mukhopadhyay A, Scheffer H, Hoefsloot LH, Veltman JA, Cremers FP, Collin RW.Next-generation sequencing of a 40 Mb linkage interval reveals TSPAN12 mutations in patients with familial exudative vitreoretinopathy.Am J Hum Genet. 2010 Feb 12;86(2):240-7.
  72. Pandey AK, Munjal N, Datta M.Gene expression profiling and network analysis reveals lipid and steroid metabolism to be the most favored by TNFalpha in HepG2 cells.PLoS ONE. 2010 Feb 4;5(2):e9063.
  73. Kapoor P, Kumar A, Naik R, Ganguli M, Siddiqi MI, Sahasrabuddhe AA, Gupta CM.Leishmania actin binds and nicks kDNA as well as inhibits decatenation activity of type II topoisomerase.Nucleic Acids Res. 2010 Jun;38(10):3308-17.
  74. Kapardar RK, Ranjan R, Grover A, Puri M, Sharma R.Identification and characterization of genes conferring salt tolerance to Escherichia coli from pond water metagenome.Bioresource Technol. 2010 Jun;101(11):3917-24.
  75. Singh B, Oellerich M, Kumar R, Kumar M, Bhadoria DP, Reichard U, Gupta VK, Sharma GL, Asif AR.Immuno-reactive molecules identified from the secreted proteome of Aspergillus fumigatus.J Proteome Res. 2010 Nov 5;9(11):5517-29.
  76. Sachdeva P, Misra R, Tyagi AK, Singh Y.The sigma factors of Mycobacterium tuberculosis: regulation of the regulators.FEBS J. 2010 Feb;277(3):605-26.
  77. Mehta AK, Singh BP, Arora N, Gaur SN.Choline attenuates immune inflammation and suppresses oxidative stress in patients with asthma.Immunobiology. 2010 Jul;215(7):527-34.
  78. Bandyopadhyay A, Arora A, Jain S, Laskar A, Mandal C, Ivanisenko VA, Fomin ES, Pintus SS, Kolchanov NA, Maiti S, Ramachandran S.Expression and molecular characterization of the Mycobacterium tuberculosis PII protein.J Biochem. 2010 Feb;147(2):279-89.
  79. Maiti S.Human telomeric G-quadruplex.FEBS J. 2010 Mar;277(5):1097
  80. Srivastava D, Mehta AK, Arora N, Gaur SN, Singh BP.Proteolytically Inactive Per a 10 Allergen of Periplaneta americana Modulates Th2 Response and Enhances IL-10 in Mouse Model.J Clin Immunol. 2010 May;30(3):426-34.
  81. Ahmad T, Mabalirajan U, Ghosh B, Agrawal A.Altered asymmetric dimethyl arginine metabolism in allergically inflamed mouse lungs.Am J Resp Cell Mol. 2010 Jan;42(1):3-8.
  82. Pasha S, Gupta K.Various drug delivery approaches to the central nervous system.Expert Opin Drug Deliv. 2010 Jan;7(1):113-35.
  83. Hogewind BF, Mukhopadhyay A, Theelen T, Hollander AI, Hoyng CB.Variable clinical spectrum of the myocilin Gln368X mutation in a Dutch family with primary open angle glaucoma.Curr Eye Res. 2010 Jan;35(1):31-6.
  84. Bargaje R, Hariharan M, Scaria V, Pillai B.Consensus miRNA expression profiles derived from interplatform normalization of microarray data.RNA. 2010 Jan;16(1):16-25.
  85. Balasubramanian C, Ojha RP, Maiti S, Desideri A.Sampling the structure of the noncanonical lin-4:lin-14 microRNA:mRNA complex by molecular dynamics simulations.J Phys Chem B. 2010 Dec 16;114(49):16443-9.
  86. Narang A, Roy RD, Chaurasia A, Mukhopadhyay A, Mukerji M; Indian Genome Variation Consortium, Dash D.IGVBrowser--a genomic variation resource from diverse Indian populations.Database (Oxford). 2010 Sep 15;2010:baq022.
  87. Kapardar RK, Ranjan R, Puri M, Sharma R.Sequence analysis of a salt tolerant metagenomic clone.Ind J Microbiol. 2010 Jun; 50(2): 212-215.
  88. Suresh PS, Kumar A, Kumar R.Three-dimensional model for the N-terminal A domain of DmpR (2-dimethylphenol) protein based on secondary structure prediction and fold recognition.In Silico Biol. 2010 Oct; 10: 1-11
  89. Sharma A.Transcriptome bioinformatic analysis identifies potential therapeutic mechanism of pentylenetetrazole in Down syndrome.BioData Min. 2010 Oct 28;3(1):7.
  90. Yadav V, Mandhan R, Kumar M, Gupta J, Sharma GL.Characterization of the Escherichia coli Antifungal Protein PPEBL21.Int J Microbiol. 2010; 2010: 196363.
  91. Kannoujia DK, Ali S, Nahar P.Single-step covalent immobilization of oligonucleotides onto solid surface.Anal Methods. 2010 Feb; 2, 212 - 216.
  92. Basseri S, Caldwell J, Sengupta S, Kumar A, Austin RC.Homocysteine as an Endogenous Toxin in Cardiovascular Disease.(Book Chapter). Endogenous Toxins. Editor(s): Prof. Peter J. O'Brien, Prof. W. Robert Bruce: 349 - 378.